CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
nucleus 1
cytosol 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, golgi, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61871	Soybean	endoplasmic reticulum	96.43	96.14
KRH52536	Soybean	endoplasmic reticulum	91.07	90.27
KRH61874	Soybean	endoplasmic reticulum	90.48	89.68
VIT_04s0008g04350.t01	Wine grape	cytosol, plastid	84.52	83.53
Solyc08g067910.2.1	Tomato	plastid	80.95	79.77
PGSC0003DMT400037606	Potato	cytosol, plastid	80.06	79.12
PGSC0003DMT400011584	Potato	cytosol, plastid	77.38	73.86
GSMUA_Achr7P08550_001	Banana	cytosol	68.45	67.25
CDX94818	Canola	cytosol	67.26	67.06
GSMUA_Achr10P...	Banana	cytosol	67.86	66.47
CDY67342	Canola	cytosol	66.96	65.98
CDY47175	Canola	cytosol	66.96	65.79
Bra015036.1-P	Field mustard	cytosol	67.26	65.7
GSMUA_Achr6P04790_001	Banana	cytosol	66.67	65.69
CDX77428	Canola	cytosol	66.67	65.12
CDX93010	Canola	cytosol	67.86	64.59
AT3G24350.2	Thale cress	cytosol	68.75	63.99
Os01t0179200-01	Rice	plasma membrane	65.48	63.95
CDY66440	Canola	cytosol	67.26	63.13
Zm00001d008758_P001	Maize	plasma membrane	64.58	63.08
Zm00001d039614_P001	Maize	plasma membrane	64.29	62.97
TraesCS3A01G119100.1	Wheat	plastid	64.29	62.97
HORVU3Hr1G022030.2	Barley	plastid	63.99	62.87
TraesCS3B01G138100.1	Wheat	plastid	63.99	62.87
EES02357	Sorghum	plastid	63.39	62.65
TraesCS3D01G121000.2	Wheat	plastid	63.69	62.39
Bra001945.1-P	Field mustard	cytosol	67.56	61.85
Bra028370.1-P	Field mustard	cytosol	54.17	61.28
KRH14969	Soybean	cytosol	37.2	51.65
KRH15025	Soybean	cytosol	51.19	51.65
KRH73168	Soybean	cytosol	50.89	51.04

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100810956	MapMan:22.7.1.3	EMBL:ACUP02003423	EnsemblPlantsGene:GLYMA_06G073900	GO:GO:0000139
GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886
GO:GO:0006888	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048278	UniProt:I1K911	InterPro:IPR000727
EnsemblPlants:KRH52535	ProteinID:KRH52535	ProteinID:KRH52535.1	PFAM:PF05739	PFAM:PF11416	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF206	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661
InterPro:Syntaxin-5_N	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0001CA8F08	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:5696712..5700728

Molecular Weight (calculated)

37374.1 Da

IEP (calculated)

9.737

GRAVY (calculated)

-0.460

Length

336 amino acids

Sequence
(BLAST)

001: MHTKSAQSSF RDRTHEFQSI AERLKKTGPA PNGQSSSSSR SEEQRSAIAN QSEFNRRASK IGFGIHQTSQ KLAKLAKLAK RTSVFDDPTM EIQELTGVIK
101: QDITALNSAV VDLQLLSNSR NESGNASTDT TSHSTTVVDD LKTRLMSATK EFKDVLTMRT ENLKVHENRR QLFSATASKD SANPFVRQRP LATRSAASTS
201: NAPAAPWATG SSSSQLFPKK QVDGESQPLL QQQQQQQEVV PLQDSYMQNR AEALQNVEST IHELSNIFNQ LATLVSQQGE IAIRIDENMD DTLANVEGAQ
301: GALLKYLNNI SSNRWLMIKI FFILIFFLMV FLFFVA

Best Arabidopsis Sequence Match ( AT3G24350.1 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.