Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH15025 | Soybean | cytosol | 94.21 | 68.47 |
| KRH73168 | Soybean | cytosol | 87.19 | 62.99 |
| CDX70131 | Canola | cytosol | 14.05 | 53.12 |
| AT5G05760.1 | Thale cress | cytosol | 59.09 | 42.56 |
| Bra005866.1-P | Field mustard | cytosol, plastid | 58.26 | 41.47 |
| CDX80972 | Canola | plastid | 58.26 | 41.35 |
| CDY11339 | Canola | cytosol, plastid | 57.85 | 41.18 |
| PGSC0003DMT400047329 | Potato | cytosol, plastid | 56.61 | 40.9 |
| VIT_13s0067g00280.t01 | Wine grape | plastid | 65.7 | 40.25 |
| Solyc07g054140.2.1 | Tomato | cytosol, plastid | 50.83 | 38.68 |
| KRH61871 | Soybean | endoplasmic reticulum | 52.48 | 37.69 |
| KRH52535 | Soybean | cytosol, plastid | 51.65 | 37.2 |
| KRH52536 | Soybean | endoplasmic reticulum | 51.65 | 36.87 |
| KRH61874 | Soybean | endoplasmic reticulum | 51.65 | 36.87 |
| CDY14956 | Canola | cytosol | 16.12 | 35.14 |
Protein Annotations
| MapMan:22.7.1.3 | UniProt:A0A0R0GJ24 | EMBL:ACUP02008547 | EMBL:ACUP02008548 | EnsemblPlantsGene:GLYMA_14G060800 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:IPR000727 |
| EnsemblPlants:KRH14969 | ProteinID:KRH14969 | ProteinID:KRH14969.1 | PFAM:PF05739 | PFAM:PF11416 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF117 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin-5_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI0006EDDD4E | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr14:-:4935552..4939015
Molecular Weight (calculated)
27039.0 Da
IEP (calculated)
8.006
GRAVY (calculated)
-0.421
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSYRDRTS EFRLLLETLK KIGSPVQPEN APSTSHGESY SRSEFNRKAS RIGLGIHETS QKIARLTQLA RKSSMFNDPA VEIQELTVLI KNEITALNSA
101: LFDLQTVQNT DMADGGYSQD TIVHSTANIK AHENRKQIFS KNASRENPLQ HQPKPTTEPP PWSNSSNASE SLHQELALPS NGAPVGNQLR IDDNMDESSA
201: NVEGAHSSLL RHLNRISSNR WLLIKIFVIL ILFLMIFIFF VA
101: LFDLQTVQNT DMADGGYSQD TIVHSTANIK AHENRKQIFS KNASRENPLQ HQPKPTTEPP PWSNSSNASE SLHQELALPS NGAPVGNQLR IDDNMDESSA
201: NVEGAHSSLL RHLNRISSNR WLLIKIFVIL ILFLMIFIFF VA
001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA
Arabidopsis Description
SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.