CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93629	Soybean	endoplasmic reticulum	99.3	99.3
KRH30101	Soybean	cytosol, endoplasmic reticulum	95.1	95.1
KRH62796	Soybean	endoplasmic reticulum	95.1	95.1
Bra001028.1-P	Field mustard	cytosol	87.41	87.41
CDY55795	Canola	cytosol	87.41	87.41
CDY43263	Canola	cytosol	87.41	87.41
Bra039150.1-P	Field mustard	cytosol	87.41	87.41
CDY37549	Canola	cytosol, extracellular	87.41	87.41
CDY34702	Canola	cytosol	87.41	87.41
VIT_17s0000g06980.t01	Wine grape	cytosol	86.71	86.71
AT3G02080.1	Thale cress	cytosol	86.71	86.71
Bra021478.1-P	Field mustard	cytosol	86.71	86.71
AT5G15520.1	Thale cress	cytosol	86.71	86.71
CDY23083	Canola	cytosol	85.31	85.31
CDY02168	Canola	cytosol	85.31	85.31
Bra012980.1-P	Field mustard	cytosol	85.31	85.31
AT5G61170.1	Thale cress	cytosol	85.31	85.31
CDY47020	Canola	cytosol	84.62	84.62
Bra029331.1-P	Field mustard	cytosol	72.03	83.74
CDX87203	Canola	cytosol	83.22	83.22
VIT_01s0011g00680.t01	Wine grape	cytosol	84.62	82.88
Bra035939.1-P	Field mustard	cytosol	82.52	82.52
GSMUA_Achr9P09350_001	Banana	cytosol	81.12	82.27
GSMUA_Achr6P34920_001	Banana	cytosol	80.42	81.56
Solyc12g039120.1.1	Tomato	nucleus	81.12	81.12
PGSC0003DMT400041313	Potato	cytosol	81.12	81.12
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	81.82	79.05
Solyc03g115360.2.1	Tomato	nucleus	79.02	79.02
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	79.02	77.93
PGSC0003DMT400063101	Potato	cytosol	77.62	77.62
CDY16820	Canola	cytosol	83.22	77.27
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	78.32	77.24
EES14121	Sorghum	cytosol	78.32	77.24
KXG39115	Sorghum	cytosol	78.32	77.24
GSMUA_Achr10P...	Banana	cytosol	79.02	72.9
TraesCS5D01G174600.1	Wheat	cytosol	74.13	68.39
CDY42857	Canola	cytosol	67.83	66.9
HORVU6Hr1G062080.1	Barley	cytosol	28.67	65.08
TraesCS5A01G170200.1	Wheat	cytosol	74.13	64.24
TraesCS5B01G167000.2	Wheat	cytosol	74.13	64.24
HORVU5Hr1G031630.1	Barley	cytosol	28.67	62.12
HORVU2Hr1G019060.1	Barley	cytosol	33.57	59.26
HORVU1Hr1G061060.1	Barley	cytosol	30.07	55.84
HORVU6Hr1G064520.1	Barley	cytosol	30.77	55.0
GSMUA_Achr6P30810_001	Banana	cytosol	16.08	54.76
HORVU5Hr1G052240.8	Barley	plastid	64.34	49.2

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	EMBL:ACUP02008071	EnsemblPlantsGene:GLYMA_13G057500	GO:GO:0000028	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627	UniProt:I1LWR7	InterPro:IPR038111
EnsemblPlants:KRH18402	ProteinID:KRH18402	ProteinID:KRH18402.1	PFAM:PD003854	PFAM:PF01090	ScanProsite:PS00628
PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS	InterPro:Ribosomal_S19e_sf	SMART:SM01413
SUPFAM:SSF46785	UniParc:UPI000233AF7E	InterPro:WH_DNA-bd_sf	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:15518837..15520836

Molecular Weight (calculated)

15880.2 Da

IEP (calculated)

10.774

GRAVY (calculated)

-0.425

Length

143 amino acids

Sequence
(BLAST)

001: MATARTVKDV SPHDFVKAYA SHLKRSGKME LPEWTDIVKT AKFKELAPYD PDWYYVRAAS MARKIYLRGG LGVGAFQRIY GGSKRNGSRP PHFCKSSGAI
101: ARHILQQLQN MSIVEIDTKG GRKITSSGRR DLDQVAGRIV VAA

Best Arabidopsis Sequence Match ( AT3G02080.1 )
(BLAST)

001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPTWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MNIVELDTKG GRRITSSGQR DLDQVAGRIA VEP

Arabidopsis Description

RPS19A40S ribosomal protein S19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.