Factsheet for GSMUA_Achr10P18290_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P34920_001	Banana	cytosol	83.87	92.2
GSMUA_Achr9P09350_001	Banana	cytosol	83.23	91.49
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	83.87	87.84
KRH62796	Soybean	endoplasmic reticulum	75.48	81.82
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	76.13	81.38
KRH30101	Soybean	cytosol, endoplasmic reticulum	74.19	80.42
VIT_17s0000g06980.t01	Wine grape	cytosol	74.19	80.42
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	74.84	80.0
KRG93629	Soybean	endoplasmic reticulum	73.55	79.72
EES14121	Sorghum	cytosol	74.19	79.31
KXG39115	Sorghum	cytosol	74.19	79.31
KRH18402	Soybean	nucleus	72.9	79.02
AT5G15520.1	Thale cress	cytosol	72.9	79.02
Solyc03g115360.2.1	Tomato	nucleus	72.9	79.02
CDY34702	Canola	cytosol	72.26	78.32
CDY37549	Canola	cytosol, extracellular	72.26	78.32
CDY43263	Canola	cytosol	72.26	78.32
CDY55795	Canola	cytosol	72.26	78.32
Bra039150.1-P	Field mustard	cytosol	72.26	78.32
PGSC0003DMT400063101	Potato	cytosol	72.26	78.32
VIT_01s0011g00680.t01	Wine grape	cytosol	73.55	78.08
Bra001028.1-P	Field mustard	cytosol	71.61	77.62
Bra021478.1-P	Field mustard	cytosol	71.61	77.62
Bra035939.1-P	Field mustard	cytosol	71.61	77.62
AT5G61170.1	Thale cress	cytosol	71.61	77.62
AT3G02080.1	Thale cress	cytosol	71.61	77.62
Bra012980.1-P	Field mustard	cytosol	71.61	77.62
CDY02168	Canola	cytosol	71.61	77.62
CDY23083	Canola	cytosol	71.61	77.62
Solyc12g039120.1.1	Tomato	nucleus	70.97	76.92
PGSC0003DMT400041313	Potato	cytosol	70.97	76.92
CDX87203	Canola	cytosol	70.97	76.92
Bra029331.1-P	Field mustard	cytosol	60.65	76.42
CDY47020	Canola	cytosol	69.03	74.83
TraesCS5D01G174600.1	Wheat	cytosol	73.55	73.55
CDY16820	Canola	cytosol	70.97	71.43
TraesCS5A01G170200.1	Wheat	cytosol	73.55	69.09
TraesCS5B01G167000.2	Wheat	cytosol	73.55	69.09
HORVU5Hr1G031630.1	Barley	cytosol	28.39	66.67
HORVU6Hr1G062080.1	Barley	cytosol	26.45	65.08
HORVU6Hr1G064520.1	Barley	cytosol	30.97	60.0
CDY42857	Canola	cytosol	56.13	60.0
GSMUA_Achr6P30810_001	Banana	cytosol	16.13	59.52
HORVU2Hr1G019060.1	Barley	cytosol	30.97	59.26
HORVU1Hr1G061060.1	Barley	cytosol	28.39	57.14
HORVU5Hr1G052240.8	Barley	plastid	64.52	53.48

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr10G18290_001	EnsemblPlants:GSMUA_Achr10P18290_001
EnsemblPlants:GSMUA_Achr10T18290_001	InterPro:IPR038111	UniProt:M0RJA4	PFAM:PD003854	PFAM:PF01090	ScanProsite:PS00628
PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS	InterPro:Ribosomal_S19e_sf	SMART:SM01413
SUPFAM:SSF46785	UniParc:UPI000294DC55	InterPro:WH_DNA-bd_sf	:	:	:

Description

40S ribosomal protein S19 [Source:GMGC_GENE;Acc:GSMUA_Achr10G18290_001]

Coordinates

chr10:-:25081306..25084259

Molecular Weight (calculated)

17284.8 Da

IEP (calculated)

10.459

GRAVY (calculated)

-0.468

Length

155 amino acids

Sequence
(BLAST)

001: MEQTPGAVSK TVKDVSPHEF VKAYSAHLKR SGKLELPEWI DIVKTGRFKE LAPYDPDWYY IRAASMARKI YLRQGIGVGG FQKIYGGRKR NGSRPPHFCK
101: SSGAIARHIL QQLQNVNIIE IDPKGGRRIT SQGQRDLDQV AGCVWGTSIT LSSVT

Best Arabidopsis Sequence Match ( AT5G61170.1 )
(BLAST)

001: MATGKTVKDV SPHEFVKAYA AHLKRSGKIE LPLWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGV
101: ARHILQQLQT MNIVDLDTKG GRKITSSGQR DLDQVAGRIA AAV

Arabidopsis Description

RPS19C40S ribosomal protein S19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.