CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14121	Sorghum	cytosol	98.62	98.62
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	96.55	96.55
GSMUA_Achr6P34920_001	Banana	cytosol	82.07	84.4
GSMUA_Achr9P09350_001	Banana	cytosol	81.38	83.69
KRH62796	Soybean	endoplasmic reticulum	79.31	80.42
KRH30101	Soybean	cytosol, endoplasmic reticulum	79.31	80.42
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	81.38	79.73
KRH18402	Soybean	nucleus	77.24	78.32
KRG93629	Soybean	endoplasmic reticulum	77.24	78.32
VIT_17s0000g06980.t01	Wine grape	cytosol	75.86	76.92
VIT_01s0011g00680.t01	Wine grape	cytosol	76.55	76.03
Solyc12g039120.1.1	Tomato	nucleus	74.48	75.52
Solyc03g115360.2.1	Tomato	nucleus	74.48	75.52
PGSC0003DMT400041313	Potato	cytosol	74.48	75.52
GSMUA_Achr10P...	Banana	cytosol	79.31	74.19
Bra035939.1-P	Field mustard	cytosol	73.1	74.13
PGSC0003DMT400063101	Potato	cytosol	73.1	74.13
CDX87203	Canola	cytosol	72.41	73.43
Bra012980.1-P	Field mustard	cytosol	71.72	72.73
AT5G61170.1	Thale cress	cytosol	71.72	72.73
CDY23083	Canola	cytosol	71.72	72.73
CDY02168	Canola	cytosol	71.72	72.73
AT5G15520.1	Thale cress	cytosol	71.03	72.03
CDY47020	Canola	cytosol	71.03	72.03
Bra029331.1-P	Field mustard	cytosol	60.69	71.54
CDY55795	Canola	cytosol	70.34	71.33
CDY43263	Canola	cytosol	70.34	71.33
CDY37549	Canola	cytosol, extracellular	70.34	71.33
CDY34702	Canola	cytosol	70.34	71.33
Bra039150.1-P	Field mustard	cytosol	70.34	71.33
Bra021478.1-P	Field mustard	cytosol	70.34	71.33
AT3G02080.1	Thale cress	cytosol	70.34	71.33
Bra001028.1-P	Field mustard	cytosol	69.66	70.63
CDY16820	Canola	cytosol	72.41	68.18
GSMUA_Achr6P30810_001	Banana	cytosol	17.24	59.52
CDY42857	Canola	cytosol	56.55	56.55

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	UniProt:A0A1B6QMI3	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR038111
EnsemblPlants:KXG39115	ProteinID:KXG39115	ProteinID:KXG39115.1	PFAM:PD003854	PFAM:PF01090	ScanProsite:PS00628
PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS	InterPro:Ribosomal_S19e_sf	SMART:SM01413
EnsemblPlantsGene:SORBI_3001G334300	SUPFAM:SSF46785	UniParc:UPI0001FCD25E	InterPro:WH_DNA-bd_sf	:	:

Description

hypothetical protein

Coordinates

chr1:-:62295150..62297144

Molecular Weight (calculated)

16214.6 Da

IEP (calculated)

10.715

GRAVY (calculated)

-0.543

Length

145 amino acids

Sequence
(BLAST)

001: MAASTARTVK DVNPHEFVKA YSAHLKRSGK MELPEWVDIV KTARFKELPP YDPDWYYTRA ASIARKIYLR QGIGVGGFQK IYGGRQRNGS RPPHFCKSSG
101: ALSRNILQQL QKMGIIDVDP KGGRLITSQG RRDLDQVAGR VAVEA

Best Arabidopsis Sequence Match ( AT5G61170.1 )
(BLAST)

001: MATGKTVKDV SPHEFVKAYA AHLKRSGKIE LPLWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGV
101: ARHILQQLQT MNIVDLDTKG GRKITSSGQR DLDQVAGRIA AAV

Arabidopsis Description

RPS19C40S ribosomal protein S19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.