Factsheet for GSMUA_Achr9P09350_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P34920_001	Banana	cytosol	97.87	97.87
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	97.87	93.24
KRH62796	Soybean	endoplasmic reticulum	85.11	83.92
GSMUA_Achr10P...	Banana	cytosol	91.49	83.23
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	85.11	82.76
KRH30101	Soybean	cytosol, endoplasmic reticulum	83.69	82.52
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	84.4	82.07
KRG93629	Soybean	endoplasmic reticulum	82.98	81.82
EES14121	Sorghum	cytosol	83.69	81.38
KXG39115	Sorghum	cytosol	83.69	81.38
KRH18402	Soybean	nucleus	82.27	81.12
VIT_17s0000g06980.t01	Wine grape	cytosol	82.27	81.12
Bra001028.1-P	Field mustard	cytosol	81.56	80.42
VIT_01s0011g00680.t01	Wine grape	cytosol	82.98	80.14
AT5G15520.1	Thale cress	cytosol	80.85	79.72
CDY34702	Canola	cytosol	80.85	79.72
CDY37549	Canola	cytosol, extracellular	80.85	79.72
Bra039150.1-P	Field mustard	cytosol	80.85	79.72
CDY43263	Canola	cytosol	80.85	79.72
CDY55795	Canola	cytosol	80.85	79.72
Bra021478.1-P	Field mustard	cytosol	80.14	79.02
PGSC0003DMT400041313	Potato	cytosol	80.14	79.02
PGSC0003DMT400063101	Potato	cytosol	80.14	79.02
Solyc03g115360.2.1	Tomato	nucleus	80.14	79.02
Solyc12g039120.1.1	Tomato	nucleus	80.14	79.02
AT5G61170.1	Thale cress	cytosol	80.14	79.02
AT3G02080.1	Thale cress	cytosol	80.14	79.02
Bra012980.1-P	Field mustard	cytosol	79.43	78.32
CDY23083	Canola	cytosol	79.43	78.32
Bra035939.1-P	Field mustard	cytosol	79.43	78.32
CDY02168	Canola	cytosol	79.43	78.32
CDX87203	Canola	cytosol	78.72	77.62
Bra029331.1-P	Field mustard	cytosol	66.67	76.42
CDY47020	Canola	cytosol	77.31	76.22
TraesCS5D01G174600.1	Wheat	cytosol	80.85	73.55
CDY16820	Canola	cytosol	78.72	72.08
TraesCS5A01G170200.1	Wheat	cytosol	80.85	69.09
TraesCS5B01G167000.2	Wheat	cytosol	80.85	69.09
GSMUA_Achr6P30810_001	Banana	cytosol	20.57	69.05
HORVU6Hr1G062080.1	Barley	cytosol	29.79	66.67
HORVU5Hr1G031630.1	Barley	cytosol	31.21	66.67
CDY42857	Canola	cytosol	63.12	61.38
HORVU2Hr1G019060.1	Barley	cytosol	34.75	60.49
HORVU6Hr1G064520.1	Barley	cytosol	34.04	60.0
HORVU1Hr1G061060.1	Barley	cytosol	31.91	58.44
HORVU5Hr1G052240.8	Barley	plastid	69.5	52.41

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr9G09350_001	EnsemblPlants:GSMUA_Achr9P09350_001
EnsemblPlants:GSMUA_Achr9T09350_001	InterPro:IPR038111	UniProt:M0TYU4	PFAM:PD003854	PFAM:PF01090	ScanProsite:PS00628
PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS	InterPro:Ribosomal_S19e_sf	SMART:SM01413
SUPFAM:SSF46785	UniParc:UPI0002965AB1	InterPro:WH_DNA-bd_sf	:	:	:

Description

40S ribosomal protein S19 [Source:GMGC_GENE;Acc:GSMUA_Achr9G09350_001]

Coordinates

chr9:+:6111969..6114868

Molecular Weight (calculated)

15986.4 Da

IEP (calculated)

10.627

GRAVY (calculated)

-0.644

Length

141 amino acids

Sequence
(BLAST)

001: MENAVAKTVK DVSPHEFVKA YSAHLKRSGK MELPEWTDIV KTGRFKELAP YDPDWYYIRA ASMARKIYLR QGIGVGGFQK IYGGRKRNGS RPPHFCKSSG
101: AIARHILQQL ERMNIIEIEP KGGRKITSQG QRDLDQVAGR V

Best Arabidopsis Sequence Match ( AT5G61170.1 )
(BLAST)

001: MATGKTVKDV SPHEFVKAYA AHLKRSGKIE LPLWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGV
101: ARHILQQLQT MNIVDLDTKG GRKITSSGQR DLDQVAGRIA AAV

Arabidopsis Description

RPS19C40S ribosomal protein S19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.