Factsheet for GSMUA_Achr6P30810_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G062080.1	Barley	cytosol	52.38	34.92
HORVU5Hr1G031630.1	Barley	cytosol	52.38	33.33
HORVU6Hr1G064520.1	Barley	cytosol	54.76	28.75
HORVU1Hr1G061060.1	Barley	cytosol	52.38	28.57
HORVU2Hr1G019060.1	Barley	cytosol	54.76	28.4
GSMUA_Achr9P09350_001	Banana	cytosol	69.05	20.57
GSMUA_Achr6P34920_001	Banana	cytosol	66.67	19.86
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	66.67	18.92
Bra029331.1-P	Field mustard	cytosol	54.76	18.7
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	61.9	17.93
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	61.9	17.93
KRH30101	Soybean	cytosol, endoplasmic reticulum	59.52	17.48
VIT_17s0000g06980.t01	Wine grape	cytosol	59.52	17.48
KRH62796	Soybean	endoplasmic reticulum	59.52	17.48
KXG39115	Sorghum	cytosol	59.52	17.24
EES14121	Sorghum	cytosol	59.52	17.24
CDY23083	Canola	cytosol	57.14	16.78
KRG93629	Soybean	endoplasmic reticulum	57.14	16.78
AT5G61170.1	Thale cress	cytosol	57.14	16.78
Bra012980.1-P	Field mustard	cytosol	57.14	16.78
CDY02168	Canola	cytosol	57.14	16.78
Solyc03g115360.2.1	Tomato	nucleus	57.14	16.78
VIT_01s0011g00680.t01	Wine grape	cytosol	57.14	16.44
GSMUA_Achr10P...	Banana	cytosol	59.52	16.13
TraesCS5D01G174600.1	Wheat	cytosol	59.52	16.13
CDX87203	Canola	cytosol	54.76	16.08
PGSC0003DMT400063101	Potato	cytosol	54.76	16.08
Bra035939.1-P	Field mustard	cytosol	54.76	16.08
PGSC0003DMT400041313	Potato	cytosol	54.76	16.08
Solyc12g039120.1.1	Tomato	nucleus	54.76	16.08
KRH18402	Soybean	nucleus	54.76	16.08
AT5G15520.1	Thale cress	cytosol	52.38	15.38
AT3G02080.1	Thale cress	cytosol	52.38	15.38
Bra001028.1-P	Field mustard	cytosol	52.38	15.38
Bra021478.1-P	Field mustard	cytosol	52.38	15.38
Bra039150.1-P	Field mustard	cytosol	52.38	15.38
CDY55795	Canola	cytosol	52.38	15.38
CDY47020	Canola	cytosol	52.38	15.38
CDY43263	Canola	cytosol	52.38	15.38
CDY37549	Canola	cytosol, extracellular	52.38	15.38
CDY34702	Canola	cytosol	52.38	15.38
TraesCS5A01G170200.1	Wheat	cytosol	59.52	15.15
TraesCS5B01G167000.2	Wheat	cytosol	59.52	15.15
CDY16820	Canola	cytosol	54.76	14.94
HORVU5Hr1G052240.8	Barley	plastid	26.19	5.88
CDY42857	Canola	cytosol	14.29	4.14

Protein Annotations

Gene3D:1.10.10.2700	MapMan:35.2	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G30810_001	EnsemblPlants:GSMUA_Achr6P30810_001
EnsemblPlants:GSMUA_Achr6T30810_001	InterPro:IPR038111	UniProt:M0TBM6	PFAM:PD003854	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_sf
UniParc:UPI000295C433	:	:	:	:	:

Description

40S ribosomal protein S19 [Source:GMGC_GENE;Acc:GSMUA_Achr6G30810_001]

Coordinates

chr6:-:30779208..30779428

Molecular Weight (calculated)

4657.7 Da

IEP (calculated)

9.834

GRAVY (calculated)

0.012

Length

42 amino acids

Sequence
(BLAST)

1: MENAMARTVK DVSPHEFVKS YSAYLKRSGK IRVAVALDSC VV

Best Arabidopsis Sequence Match ( AT5G61170.1 )
(BLAST)

001: MATGKTVKDV SPHEFVKAYA AHLKRSGKIE LPLWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGV
101: ARHILQQLQT MNIVDLDTKG GRKITSSGQR DLDQVAGRIA AAV

Arabidopsis Description

RPS19C40S ribosomal protein S19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.