Factsheet for GSMUA_Achr6P34920_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P09350_001	Banana	cytosol	97.87	97.87
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	95.74	91.22
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	86.52	84.14
GSMUA_Achr10P...	Banana	cytosol	92.2	83.87
KRH62796	Soybean	endoplasmic reticulum	84.4	83.22
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	85.11	82.76
KXG39115	Sorghum	cytosol	84.4	82.07
EES14121	Sorghum	cytosol	84.4	82.07
KRH30101	Soybean	cytosol, endoplasmic reticulum	82.98	81.82
VIT_17s0000g06980.t01	Wine grape	cytosol	82.98	81.82
KRG93629	Soybean	endoplasmic reticulum	82.27	81.12
KRH18402	Soybean	nucleus	81.56	80.42
Solyc12g039120.1.1	Tomato	nucleus	81.56	80.42
PGSC0003DMT400041313	Potato	cytosol	81.56	80.42
Solyc03g115360.2.1	Tomato	nucleus	81.56	80.42
PGSC0003DMT400063101	Potato	cytosol	81.56	80.42
VIT_01s0011g00680.t01	Wine grape	cytosol	82.98	80.14
CDY43263	Canola	cytosol	80.14	79.02
AT5G15520.1	Thale cress	cytosol	80.14	79.02
CDY55795	Canola	cytosol	80.14	79.02
CDY37549	Canola	cytosol, extracellular	80.14	79.02
CDY34702	Canola	cytosol	80.14	79.02
Bra039150.1-P	Field mustard	cytosol	80.14	79.02
AT5G61170.1	Thale cress	cytosol	79.43	78.32
Bra035939.1-P	Field mustard	cytosol	79.43	78.32
AT3G02080.1	Thale cress	cytosol	79.43	78.32
Bra021478.1-P	Field mustard	cytosol	79.43	78.32
Bra001028.1-P	Field mustard	cytosol	79.43	78.32
Bra012980.1-P	Field mustard	cytosol	78.72	77.62
CDX87203	Canola	cytosol	78.72	77.62
CDY02168	Canola	cytosol	78.72	77.62
CDY23083	Canola	cytosol	78.72	77.62
Bra029331.1-P	Field mustard	cytosol	67.38	77.24
CDY47020	Canola	cytosol	77.31	76.22
TraesCS5D01G174600.1	Wheat	cytosol	81.56	74.19
CDY16820	Canola	cytosol	78.72	72.08
TraesCS5B01G167000.2	Wheat	cytosol	81.56	69.7
TraesCS5A01G170200.1	Wheat	cytosol	81.56	69.7
HORVU6Hr1G062080.1	Barley	cytosol	29.79	66.67
GSMUA_Achr6P30810_001	Banana	cytosol	19.86	66.67
HORVU5Hr1G031630.1	Barley	cytosol	31.21	66.67
CDY42857	Canola	cytosol	63.12	61.38
HORVU2Hr1G019060.1	Barley	cytosol	34.75	60.49
HORVU6Hr1G064520.1	Barley	cytosol	34.04	60.0
HORVU1Hr1G061060.1	Barley	cytosol	31.91	58.44
HORVU5Hr1G052240.8	Barley	plastid	70.21	52.94

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G34920_001	EnsemblPlants:GSMUA_Achr6P34920_001
EnsemblPlants:GSMUA_Achr6T34920_001	InterPro:IPR038111	UniProt:M0TCT5	PFAM:PD003854	PFAM:PF01090	ScanProsite:PS00628
PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS	InterPro:Ribosomal_S19e_sf	SMART:SM01413
SUPFAM:SSF46785	UniParc:UPI0002951093	InterPro:WH_DNA-bd_sf	:	:	:

Description

40S ribosomal protein S19 [Source:GMGC_GENE;Acc:GSMUA_Achr6G34920_001]

Coordinates

chr6:-:33314852..33318019

Molecular Weight (calculated)

16057.4 Da

IEP (calculated)

10.667

GRAVY (calculated)

-0.686

Length

141 amino acids

Sequence
(BLAST)

001: MENDVAKTVK DVSPHEFVKA YSAHLKRSGK MELPEWTDIV KTGRFKELAP YDPDWYYIRA ASMARKIYLR QGIGVGGFQK IYGGRKRNGS RPPHFCKSSG
101: AIARHILQQL QRMNIIEIEP KGGRRITSQG QRDLDQVAGR V

Best Arabidopsis Sequence Match ( AT5G61170.1 )
(BLAST)

001: MATGKTVKDV SPHEFVKAYA AHLKRSGKIE LPLWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGV
101: ARHILQQLQT MNIVDLDTKG GRKITSSGQR DLDQVAGRIA AAV

Arabidopsis Description

RPS19C40S ribosomal protein S19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.