Factsheet for HORVU6Hr1G062080.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G061060.1	Barley	cytosol	92.06	75.32
HORVU2Hr1G019060.1	Barley	cytosol	92.06	71.6
HORVU5Hr1G031630.1	Barley	cytosol	74.6	71.21
HORVU6Hr1G064520.1	Barley	cytosol	88.89	70.0
GSMUA_Achr6P30810_001	Banana	cytosol	34.92	52.38
KRH62796	Soybean	endoplasmic reticulum	68.25	30.07
KRH30101	Soybean	cytosol, endoplasmic reticulum	68.25	30.07
GSMUA_Achr6P34920_001	Banana	cytosol	66.67	29.79
GSMUA_Achr9P09350_001	Banana	cytosol	66.67	29.79
Bra029331.1-P	Field mustard	cytosol	57.14	29.27
KRH18402	Soybean	nucleus	65.08	28.67
KRG93629	Soybean	endoplasmic reticulum	65.08	28.67
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	66.67	28.38
VIT_01s0011g00680.t01	Wine grape	cytosol	65.08	28.08
VIT_17s0000g06980.t01	Wine grape	cytosol	63.49	27.97
Solyc03g115360.2.1	Tomato	nucleus	61.9	27.27
PGSC0003DMT400041313	Potato	cytosol	60.32	26.57
PGSC0003DMT400063101	Potato	cytosol	60.32	26.57
Solyc12g039120.1.1	Tomato	nucleus	60.32	26.57
GSMUA_Achr10P...	Banana	cytosol	65.08	26.45
AT5G61170.1	Thale cress	cytosol	58.73	25.87
Bra012980.1-P	Field mustard	cytosol	58.73	25.87
Bra035939.1-P	Field mustard	cytosol	58.73	25.87
CDY23083	Canola	cytosol	58.73	25.87
CDX87203	Canola	cytosol	58.73	25.87
CDY02168	Canola	cytosol	58.73	25.87
CDY55795	Canola	cytosol	55.56	24.48
AT5G15520.1	Thale cress	cytosol	55.56	24.48
Bra001028.1-P	Field mustard	cytosol	55.56	24.48
Bra021478.1-P	Field mustard	cytosol	55.56	24.48
Bra039150.1-P	Field mustard	cytosol	55.56	24.48
CDY34702	Canola	cytosol	55.56	24.48
CDY37549	Canola	cytosol, extracellular	55.56	24.48
CDY43263	Canola	cytosol	55.56	24.48
CDY47020	Canola	cytosol	55.56	24.48
AT3G02080.1	Thale cress	cytosol	55.56	24.48
CDY16820	Canola	cytosol	58.73	24.03
HORVU5Hr1G052240.8	Barley	plastid	46.03	15.51
CDY42857	Canola	cytosol	28.57	12.41

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	UniProt:A0A287UE41	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU6Hr1G062080
EnsemblPlants:HORVU6Hr1G062080.1	InterPro:IPR038111	PFAM:PD003854	PFAM:PF01090	PANTHER:PTHR11710	PANTHER:PTHR11710:SF8
InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_sf	SMART:SM01413	SUPFAM:SSF46785	UniParc:UPI000B474B0A	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:415421085..415423031

Molecular Weight (calculated)

7335.8 Da

IEP (calculated)

10.556

GRAVY (calculated)

-0.957

Length

63 amino acids

Sequence
(BLAST)

1: RSRDRSRSRD RGLLARTVKD VNPHEFVKAY SAHLKRSGKM ELPEWVDIVK TAMFKELPPT DPD

Best Arabidopsis Sequence Match ( AT5G61170.1 )
(BLAST)

001: MATGKTVKDV SPHEFVKAYA AHLKRSGKIE LPLWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGV
101: ARHILQQLQT MNIVDLDTKG GRKITSSGQR DLDQVAGRIA AAV

Arabidopsis Description

RPS19C40S ribosomal protein S19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.