CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02168	Canola	cytosol	77.93	79.02
CDY23083	Canola	cytosol	77.93	79.02
CDY47020	Canola	cytosol	77.24	78.32
AT5G61170.1	Thale cress	cytosol	77.24	78.32
CDX87203	Canola	cytosol	76.55	77.62
CDY34702	Canola	cytosol	72.41	73.43
CDY37549	Canola	cytosol, extracellular	72.41	73.43
CDY43263	Canola	cytosol	72.41	73.43
CDY55795	Canola	cytosol	72.41	73.43
Bra029331.1-P	Field mustard	cytosol	61.38	72.36
CDY16820	Canola	cytosol	76.55	72.08
VIT_17s0000g06980.t01	Wine grape	cytosol	68.28	69.23
Solyc03g115360.2.1	Tomato	nucleus	68.28	69.23
PGSC0003DMT400063101	Potato	cytosol	67.59	68.53
KRG93629	Soybean	endoplasmic reticulum	67.59	68.53
Solyc12g039120.1.1	Tomato	nucleus	66.9	67.83
PGSC0003DMT400041313	Potato	cytosol	66.9	67.83
KRH62796	Soybean	endoplasmic reticulum	66.9	67.83
KRH18402	Soybean	nucleus	66.9	67.83
KRH30101	Soybean	cytosol, endoplasmic reticulum	66.9	67.83
VIT_01s0011g00680.t01	Wine grape	cytosol	64.14	63.7
GSMUA_Achr6P34920_001	Banana	cytosol	61.38	63.12
GSMUA_Achr9P09350_001	Banana	cytosol	61.38	63.12
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	62.07	60.81
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	57.93	57.93
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	57.24	57.24
KXG39115	Sorghum	cytosol	56.55	56.55
GSMUA_Achr10P...	Banana	cytosol	60.0	56.13
EES14121	Sorghum	cytosol	55.86	55.86
TraesCS5D01G174600.1	Wheat	cytosol	55.17	51.61
TraesCS5A01G170200.1	Wheat	cytosol	55.17	48.48
TraesCS5B01G167000.2	Wheat	cytosol	55.17	48.48
HORVU5Hr1G052240.8	Barley	plastid	56.55	43.85
HORVU5Hr1G031630.1	Barley	cytosol	15.86	34.85
HORVU2Hr1G019060.1	Barley	cytosol	17.93	32.1
HORVU6Hr1G064520.1	Barley	cytosol	16.55	30.0
HORVU6Hr1G062080.1	Barley	cytosol	12.41	28.57
HORVU1Hr1G061060.1	Barley	cytosol	15.17	28.57
GSMUA_Achr6P30810_001	Banana	cytosol	4.14	14.29

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	GO:A0A078HY98	UniProt:A0A078HY98	EnsemblPlants:CDY42857	ProteinID:CDY42857
ProteinID:CDY42857.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00075551001	InterPro:IPR038111	PFAM:PD003854
PFAM:PF01090	ScanProsite:PS00628	PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS
InterPro:Ribosomal_S19e_sf	SMART:SM01413	SUPFAM:SSF46785	UniParc:UPI0004EE5CDF	InterPro:WH_DNA-bd_sf	SEG:seg

Description

BnaAnng06820DBnaAnng06820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HY98]

Coordinates

chrLK032536:+:159676..161382

Molecular Weight (calculated)

16277.7 Da

IEP (calculated)

10.412

GRAVY (calculated)

-0.228

Length

145 amino acids

Sequence
(BLAST)

001: MHFSSLSAKF FFFFFFPPED YNITSKIELP PWTDIVKTGK LKELAPYDPD WYYIRAASMA RKVYLRISGS ALLGVGAFRR IYGGNKRNGS RPPHFCKSSG
101: GVARHILQQL QTMNIVDLDT KGGRKITSSG ERDLDQVVGR IAAAV

Best Arabidopsis Sequence Match ( AT3G02080.1 )
(BLAST)

001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPTWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MNIVELDTKG GRRITSSGQR DLDQVAGRIA VEP

Arabidopsis Description

RPS19A40S ribosomal protein S19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.