Factsheet for HORVU5Hr1G052240.8

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G174600.1	Wheat	cytosol	65.24	78.71
TraesCS5B01G167000.2	Wheat	cytosol	65.78	74.55
TraesCS5A01G170200.1	Wheat	cytosol	65.78	74.55
GSMUA_Achr6P34920_001	Banana	cytosol	52.94	70.21
GSMUA_Achr9P09350_001	Banana	cytosol	52.41	69.5
KRH30101	Soybean	cytosol, endoplasmic reticulum	50.8	66.43
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	52.41	66.22
Solyc12g039120.1.1	Tomato	nucleus	50.27	65.73
PGSC0003DMT400041313	Potato	cytosol	50.27	65.73
KRH62796	Soybean	endoplasmic reticulum	50.27	65.73
Solyc03g115360.2.1	Tomato	nucleus	49.73	65.03
PGSC0003DMT400063101	Potato	cytosol	49.73	65.03
KRG93629	Soybean	endoplasmic reticulum	49.73	65.03
GSMUA_Achr10P...	Banana	cytosol	53.48	64.52
KRH18402	Soybean	nucleus	49.2	64.34
VIT_17s0000g06980.t01	Wine grape	cytosol	47.59	62.24
Bra035939.1-P	Field mustard	cytosol	47.59	62.24
VIT_01s0011g00680.t01	Wine grape	cytosol	48.13	61.64
CDX87203	Canola	cytosol	47.06	61.54
AT5G15520.1	Thale cress	cytosol	46.52	60.84
AT5G61170.1	Thale cress	cytosol	46.52	60.84
CDY23083	Canola	cytosol	46.52	60.84
Bra012980.1-P	Field mustard	cytosol	46.52	60.84
CDY02168	Canola	cytosol	46.52	60.84
CDY47020	Canola	cytosol	45.99	60.14
Bra001028.1-P	Field mustard	cytosol	45.45	59.44
AT3G02080.1	Thale cress	cytosol	44.92	58.74
CDY43263	Canola	cytosol	44.92	58.74
Bra021478.1-P	Field mustard	cytosol	44.92	58.74
Bra039150.1-P	Field mustard	cytosol	44.92	58.74
CDY34702	Canola	cytosol	44.92	58.74
CDY37549	Canola	cytosol, extracellular	44.92	58.74
CDY55795	Canola	cytosol	44.92	58.74
CDY16820	Canola	cytosol	47.06	57.14
Bra029331.1-P	Field mustard	cytosol	37.43	56.91
CDY42857	Canola	cytosol	43.85	56.55
HORVU6Hr1G062080.1	Barley	cytosol	15.51	46.03
HORVU5Hr1G031630.1	Barley	cytosol	16.04	45.45
HORVU2Hr1G019060.1	Barley	cytosol	18.72	43.21
HORVU6Hr1G064520.1	Barley	cytosol	18.18	42.5
HORVU1Hr1G061060.1	Barley	cytosol	17.11	41.56
GSMUA_Achr6P30810_001	Banana	cytosol	5.88	26.19

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	UniProt:A0A287R7R6	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU5Hr1G052240
EnsemblPlants:HORVU5Hr1G052240.8	InterPro:IPR038111	PFAM:PD003854	PFAM:PF01090	ScanProsite:PS00628	PANTHER:PTHR11710
PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS	InterPro:Ribosomal_S19e_sf	SMART:SM01413	SUPFAM:SSF46785
UniParc:UPI000B4868D8	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:408670027..408671636

Molecular Weight (calculated)

20792.0 Da

IEP (calculated)

11.431

GRAVY (calculated)

-0.739

Length

187 amino acids

Sequence
(BLAST)

001: RLQKTLVPRS RSGAHTSPSF VKTTPPAARA QDGDRPRSRS RDRGLHGAHG QGCEPPRVRQ GLLRAPQALR QEMELPEWVD IVKTARFKEL PPTDADWYYI
101: RAASMARKIY LRQGIGIGGF QKIYGGRQRN GSRPPHFCKS SGAVSRNILQ ELQKMGIIDV DPKGGRLITS QGRRDLDQVA GTVPAEF

Best Arabidopsis Sequence Match ( AT3G02080.1 )
(BLAST)

001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPTWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MNIVELDTKG GRRITSSGQR DLDQVAGRIA VEP

Arabidopsis Description

RPS19A40S ribosomal protein S19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.