Factsheet for Bra029331.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012980.1-P	Field mustard	cytosol	93.5	80.42
AT5G61170.1	Thale cress	cytosol	92.68	79.72
Bra035939.1-P	Field mustard	cytosol	91.06	78.32
Bra001028.1-P	Field mustard	cytosol	90.24	77.62
Bra021478.1-P	Field mustard	cytosol	90.24	77.62
Bra039150.1-P	Field mustard	cytosol	90.24	77.62
VIT_17s0000g06980.t01	Wine grape	cytosol	85.37	73.43
KRG93629	Soybean	endoplasmic reticulum	84.55	72.73
KRH18402	Soybean	nucleus	83.74	72.03
KRH30101	Soybean	cytosol, endoplasmic reticulum	83.74	72.03
KRH62796	Soybean	endoplasmic reticulum	83.74	72.03
Solyc03g115360.2.1	Tomato	nucleus	79.67	68.53
PGSC0003DMT400063101	Potato	cytosol	78.86	67.83
GSMUA_Achr6P34920_001	Banana	cytosol	77.24	67.38
VIT_01s0011g00680.t01	Wine grape	cytosol	79.67	67.12
GSMUA_Achr9P09350_001	Banana	cytosol	76.42	66.67
Solyc12g039120.1.1	Tomato	nucleus	77.24	66.43
PGSC0003DMT400041313	Potato	cytosol	77.24	66.43
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	78.05	64.86
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	73.98	62.76
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	72.36	61.38
CDY42857	Canola	cytosol	72.36	61.38
KXG39115	Sorghum	cytosol	71.54	60.69
EES14121	Sorghum	cytosol	71.54	60.69
GSMUA_Achr10P...	Banana	cytosol	76.42	60.65
HORVU5Hr1G031630.1	Barley	cytosol	31.71	59.09
HORVU6Hr1G062080.1	Barley	cytosol	29.27	57.14
TraesCS5D01G174600.1	Wheat	cytosol	69.92	55.48
GSMUA_Achr6P30810_001	Banana	cytosol	18.7	54.76
HORVU2Hr1G019060.1	Barley	cytosol	35.77	54.32
HORVU6Hr1G064520.1	Barley	cytosol	34.15	52.5
TraesCS5A01G170200.1	Wheat	cytosol	69.92	52.12
TraesCS5B01G167000.2	Wheat	cytosol	69.92	52.12
HORVU1Hr1G061060.1	Barley	cytosol	31.71	50.65
HORVU5Hr1G052240.8	Barley	plastid	56.91	37.43

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	EnsemblPlantsGene:Bra029331	EnsemblPlants:Bra029331.1	EnsemblPlants:Bra029331.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR038111	UniProt:M4EKL4	PFAM:PD003854	PFAM:PF01090	ScanProsite:PS00628
PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS	InterPro:Ribosomal_S19e_sf	SMART:SM01413
SUPFAM:SSF46785	UniParc:UPI00025457F5	InterPro:WH_DNA-bd_sf	:	:	:

Description

AT5G61170 (E=5e-063) | 40S ribosomal protein S19 (RPS19C)

Coordinates

chrA02:+:25837275..25837871

Molecular Weight (calculated)

13685.8 Da

IEP (calculated)

10.782

GRAVY (calculated)

-0.314

Length

123 amino acids

Sequence
(BLAST)

001: MSTGKTVKDV SPHEFVKAYA AHLKRSGKIE LPPWTDIVKT VKLKELAPYD PGWYYIRAAS MARKVYLRSG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGV
101: ARHILQQLQT MNIVELDTKG LVV

Best Arabidopsis Sequence Match ( AT3G02080.1 )
(BLAST)

001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPTWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MNIVELDTKG GRRITSSGQR DLDQVAGRIA VEP

Arabidopsis Description

RPS19A40S ribosomal protein S19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.