Factsheet for Zm00001d047296_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39115	Sorghum	cytosol	96.55	96.55
EES14121	Sorghum	cytosol	96.55	96.55
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	95.17	95.17
GSMUA_Achr6P34920_001	Banana	cytosol	84.14	86.52
GSMUA_Achr9P09350_001	Banana	cytosol	82.76	85.11
KRH62796	Soybean	endoplasmic reticulum	80.0	81.12
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	82.76	81.08
KRH30101	Soybean	cytosol, endoplasmic reticulum	79.31	80.42
KRG93629	Soybean	endoplasmic reticulum	78.62	79.72
VIT_17s0000g06980.t01	Wine grape	cytosol	77.93	79.02
KRH18402	Soybean	nucleus	77.93	79.02
PGSC0003DMT400041313	Potato	cytosol	75.86	76.92
Solyc03g115360.2.1	Tomato	nucleus	75.86	76.92
Solyc12g039120.1.1	Tomato	nucleus	75.86	76.92
VIT_01s0011g00680.t01	Wine grape	cytosol	77.24	76.71
GSMUA_Achr10P...	Banana	cytosol	81.38	76.13
PGSC0003DMT400063101	Potato	cytosol	74.48	75.52
Bra035939.1-P	Field mustard	cytosol	73.79	74.83
AT5G15520.1	Thale cress	cytosol	73.1	74.13
CDX87203	Canola	cytosol	73.1	74.13
CDY02168	Canola	cytosol	72.41	73.43
AT3G02080.1	Thale cress	cytosol	72.41	73.43
AT5G61170.1	Thale cress	cytosol	72.41	73.43
Bra012980.1-P	Field mustard	cytosol	72.41	73.43
Bra039150.1-P	Field mustard	cytosol	72.41	73.43
CDY55795	Canola	cytosol	72.41	73.43
CDY23083	Canola	cytosol	72.41	73.43
CDY34702	Canola	cytosol	72.41	73.43
CDY37549	Canola	cytosol, extracellular	72.41	73.43
CDY43263	Canola	cytosol	72.41	73.43
Bra021478.1-P	Field mustard	cytosol	71.72	72.73
CDY47020	Canola	cytosol	71.72	72.73
Bra029331.1-P	Field mustard	cytosol	61.38	72.36
Bra001028.1-P	Field mustard	cytosol	71.03	72.03
CDY16820	Canola	cytosol	73.1	68.83
GSMUA_Achr6P30810_001	Banana	cytosol	17.93	61.9
CDY42857	Canola	cytosol	57.24	57.24

Protein Annotations

Gene3D:1.10.10.2700	EntrezGene:103639054	MapMan:17.1.3.1.21	ProteinID:AQL06098.1	UniProt:B4FP25	EMBL:BT038863
EMBL:EU958775	EMBL:EU967717	EMBL:EU970864	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR038111
PFAM:PD003854	PFAM:PF01090	ScanProsite:PS00628	PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e
InterPro:Ribosomal_S19e_CS	InterPro:Ribosomal_S19e_sf	SMART:SM01413	SUPFAM:SSF46785	UniParc:UPI00017B7989	InterPro:WH_DNA-bd_sf
EnsemblPlantsGene:Zm00001d047296	EnsemblPlants:Zm00001d047296_P001	EnsemblPlants:Zm00001d047296_T001	:	:	:

Description

40S ribosomal protein S19-3

Coordinates

chr9:+:125818094..125820123

Molecular Weight (calculated)

16256.6 Da

IEP (calculated)

10.648

GRAVY (calculated)

-0.559

Length

145 amino acids

Sequence
(BLAST)

001: MAASTARTVK DVNPHEFVKA YSAHLKRSGK MELPEWVDIV KTARFKELPP YDPDWYYIRA ASVARKIYLR QGIGVGGFQK IYGGRQRNGS RPPHFCKSSG
101: AISRNILQQL QEMGIIDVDP KGGRRITSQG RRDLDQVAGR VAVEA

Best Arabidopsis Sequence Match ( AT5G15520.1 )
(BLAST)

001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPLWTDIVKT GRLKELAPYD PDWYYIRAAS MARKIYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MSIVELDTKG GRRITSSGQR DLDQVAGRIA AES

Arabidopsis Description

RPS19B40S ribosomal protein S19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.