Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02168 | Canola | cytosol | 96.5 | 96.5 |
| CDY23083 | Canola | cytosol | 96.5 | 96.5 |
| AT5G61170.1 | Thale cress | cytosol | 95.8 | 95.8 |
| CDX87203 | Canola | cytosol | 94.41 | 94.41 |
| CDY34702 | Canola | cytosol | 90.91 | 90.91 |
| CDY37549 | Canola | cytosol, extracellular | 90.91 | 90.91 |
| CDY43263 | Canola | cytosol | 90.91 | 90.91 |
| CDY55795 | Canola | cytosol | 90.91 | 90.91 |
| CDY16820 | Canola | cytosol | 94.41 | 87.66 |
| KRG93629 | Soybean | endoplasmic reticulum | 85.31 | 85.31 |
| KRH30101 | Soybean | cytosol, endoplasmic reticulum | 84.62 | 84.62 |
| KRH18402 | Soybean | nucleus | 84.62 | 84.62 |
| KRH62796 | Soybean | endoplasmic reticulum | 84.62 | 84.62 |
| VIT_17s0000g06980.t01 | Wine grape | cytosol | 84.62 | 84.62 |
| Solyc03g115360.2.1 | Tomato | nucleus | 81.82 | 81.82 |
| PGSC0003DMT400063101 | Potato | cytosol | 81.12 | 81.12 |
| Solyc12g039120.1.1 | Tomato | nucleus | 80.42 | 80.42 |
| PGSC0003DMT400041313 | Potato | cytosol | 80.42 | 80.42 |
| VIT_01s0011g00680.t01 | Wine grape | cytosol | 79.72 | 78.08 |
| GSMUA_Achr6P34920_001 | Banana | cytosol | 76.22 | 77.31 |
| GSMUA_Achr9P09350_001 | Banana | cytosol | 76.22 | 77.31 |
| CDY42857 | Canola | cytosol | 78.32 | 77.24 |
| GSMUA_Achr9P26780_001 | Banana | cytosol, plasma membrane | 76.22 | 73.65 |
| Zm00001d029543_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 73.43 | 72.41 |
| Zm00001d047296_P001 | Maize | cytosol, extracellular, mitochondrion | 72.73 | 71.72 |
| KXG39115 | Sorghum | cytosol | 72.03 | 71.03 |
| EES14121 | Sorghum | cytosol | 71.33 | 70.34 |
| GSMUA_Achr10P... | Banana | cytosol | 74.83 | 69.03 |
| TraesCS5D01G174600.1 | Wheat | cytosol | 70.63 | 65.16 |
| TraesCS5A01G170200.1 | Wheat | cytosol | 70.63 | 61.21 |
| TraesCS5B01G167000.2 | Wheat | cytosol | 70.63 | 61.21 |
| HORVU5Hr1G031630.1 | Barley | cytosol | 27.27 | 59.09 |
| HORVU6Hr1G062080.1 | Barley | cytosol | 24.48 | 55.56 |
| HORVU2Hr1G019060.1 | Barley | cytosol | 30.77 | 54.32 |
| GSMUA_Achr6P30810_001 | Banana | cytosol | 15.38 | 52.38 |
| HORVU6Hr1G064520.1 | Barley | cytosol | 28.67 | 51.25 |
| HORVU1Hr1G061060.1 | Barley | cytosol | 26.57 | 49.35 |
| HORVU5Hr1G052240.8 | Barley | plastid | 60.14 | 45.99 |
Protein Annotations
| Gene3D:1.10.10.2700 | MapMan:17.1.3.1.21 | GO:A0A078I814 | UniProt:A0A078I814 | EnsemblPlants:CDY47020 | ProteinID:CDY47020 |
| ProteinID:CDY47020.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00086531001 | InterPro:IPR038111 |
| PFAM:PD003854 | PFAM:PF01090 | ScanProsite:PS00628 | PANTHER:PTHR11710 | PANTHER:PTHR11710:SF8 | InterPro:Ribosomal_S19e |
| InterPro:Ribosomal_S19e_CS | InterPro:Ribosomal_S19e_sf | SMART:SM01413 | SUPFAM:SSF46785 | UniParc:UPI0004EDB7C6 | InterPro:WH_DNA-bd_sf |
Description
BnaC02g42050DBnaC02g42050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I814]
Coordinates
chrLK032694:+:143626..144408
Molecular Weight (calculated)
15670.9 Da
IEP (calculated)
10.671
GRAVY (calculated)
-0.450
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTGKTVKDV SPHEFVKAYA SHLKRSGKIE LPPWTDIVKT GKLNELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGV
101: ARHILQQLQA MNIVDLDTKG GRKITSSGER DLDQVAGRIA AAV
101: ARHILQQLQA MNIVDLDTKG GRKITSSGER DLDQVAGRIA AAV
001: MATGKTVKDV SPHEFVKAYA AHLKRSGKIE LPLWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGV
101: ARHILQQLQT MNIVDLDTKG GRKITSSGQR DLDQVAGRIA AAV
101: ARHILQQLQT MNIVDLDTKG GRKITSSGQR DLDQVAGRIA AAV
Arabidopsis Description
RPS19C40S ribosomal protein S19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.