CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035939.1-P	Field mustard	cytosol	99.3	99.3
CDY02168	Canola	cytosol	97.2	97.2
CDY23083	Canola	cytosol	97.2	97.2
AT5G61170.1	Thale cress	cytosol	95.8	95.8
CDY47020	Canola	cytosol	94.41	94.41
CDY16820	Canola	cytosol	100.0	92.86
CDY34702	Canola	cytosol	90.91	90.91
CDY37549	Canola	cytosol, extracellular	90.91	90.91
CDY43263	Canola	cytosol	90.91	90.91
CDY55795	Canola	cytosol	90.91	90.91
VIT_17s0000g06980.t01	Wine grape	cytosol	85.31	85.31
KRG93629	Soybean	endoplasmic reticulum	83.92	83.92
KRH62796	Soybean	endoplasmic reticulum	83.22	83.22
KRH18402	Soybean	nucleus	83.22	83.22
KRH30101	Soybean	cytosol, endoplasmic reticulum	83.22	83.22
Solyc03g115360.2.1	Tomato	nucleus	82.52	82.52
PGSC0003DMT400063101	Potato	cytosol	81.82	81.82
Solyc12g039120.1.1	Tomato	nucleus	80.42	80.42
PGSC0003DMT400041313	Potato	cytosol	80.42	80.42
GSMUA_Achr6P34920_001	Banana	cytosol	77.62	78.72
GSMUA_Achr9P09350_001	Banana	cytosol	77.62	78.72
VIT_01s0011g00680.t01	Wine grape	cytosol	79.02	77.4
CDY42857	Canola	cytosol	77.62	76.55
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	78.32	75.68
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	74.83	73.79
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	74.13	73.1
KXG39115	Sorghum	cytosol	73.43	72.41
EES14121	Sorghum	cytosol	72.73	71.72
GSMUA_Achr10P...	Banana	cytosol	76.92	70.97
TraesCS5D01G174600.1	Wheat	cytosol	72.03	66.45
TraesCS5A01G170200.1	Wheat	cytosol	72.03	62.42
TraesCS5B01G167000.2	Wheat	cytosol	72.03	62.42
HORVU5Hr1G031630.1	Barley	cytosol	27.97	60.61
HORVU6Hr1G062080.1	Barley	cytosol	25.87	58.73
HORVU2Hr1G019060.1	Barley	cytosol	32.17	56.79
GSMUA_Achr6P30810_001	Banana	cytosol	16.08	54.76
HORVU6Hr1G064520.1	Barley	cytosol	30.07	53.75
HORVU1Hr1G061060.1	Barley	cytosol	27.97	51.95
HORVU5Hr1G052240.8	Barley	plastid	61.54	47.06

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	GO:A0A078DIU2	EnsemblPlants:CDX87203	ProteinID:CDX87203	ProteinID:CDX87203.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00146130001	InterPro:IPR038111	PFAM:PD003854	PFAM:PF01090
ScanProsite:PS00628	PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS	InterPro:Ribosomal_S19e_sf
SMART:SM01413	SUPFAM:SSF46785	UniParc:UPI0004EB5766	InterPro:WH_DNA-bd_sf	:	:

Description

BnaC09g05180D

Coordinates

chrLK031849:+:1147538..1148867

Molecular Weight (calculated)

15729.0 Da

IEP (calculated)

10.628

GRAVY (calculated)

-0.445

Length

143 amino acids

Sequence
(BLAST)

001: MTGKTVKDVS PHEFVKAYAA HLKRSGKIEL PAWTDIVKTG KLKELAPYDP DWYYIRAASM ARKVYLRGGL GVGAFRRIYG GSKRNGSRPP HFCKSSGGVA
101: RHILQQLQTM NIVDLDTKGG RKITSSGERD LDQVAGRIAA EAI

Best Arabidopsis Sequence Match ( AT5G61170.1 )
(BLAST)

001: MATGKTVKDV SPHEFVKAYA AHLKRSGKIE LPLWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGV
101: ARHILQQLQT MNIVDLDTKG GRKITSSGQR DLDQVAGRIA AAV

Arabidopsis Description

RPS19C40S ribosomal protein S19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.