Factsheet for TraesCS5D01G174600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G167000.2	Wheat	cytosol	100.0	93.94
TraesCS5A01G170200.1	Wheat	cytosol	100.0	93.94
GSMUA_Achr6P34920_001	Banana	cytosol	74.19	81.56
GSMUA_Achr9P09350_001	Banana	cytosol	73.55	80.85
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	74.19	77.7
KRH30101	Soybean	cytosol, endoplasmic reticulum	71.61	77.62
KRH62796	Soybean	endoplasmic reticulum	70.97	76.92
KRG93629	Soybean	endoplasmic reticulum	69.03	74.83
Solyc03g115360.2.1	Tomato	nucleus	69.03	74.83
Solyc12g039120.1.1	Tomato	nucleus	68.39	74.13
KRH18402	Soybean	nucleus	68.39	74.13
PGSC0003DMT400041313	Potato	cytosol	68.39	74.13
GSMUA_Achr10P...	Banana	cytosol	73.55	73.55
VIT_17s0000g06980.t01	Wine grape	cytosol	67.74	73.43
PGSC0003DMT400063101	Potato	cytosol	67.74	73.43
Bra035939.1-P	Field mustard	cytosol	67.1	72.73
VIT_01s0011g00680.t01	Wine grape	cytosol	68.39	72.6
CDX87203	Canola	cytosol	66.45	72.03
CDY23083	Canola	cytosol	65.81	71.33
CDY02168	Canola	cytosol	65.81	71.33
Bra012980.1-P	Field mustard	cytosol	65.81	71.33
AT5G61170.1	Thale cress	cytosol	65.81	71.33
CDY47020	Canola	cytosol	65.16	70.63
AT5G15520.1	Thale cress	cytosol	64.52	69.93
Bra029331.1-P	Field mustard	cytosol	55.48	69.92
Bra001028.1-P	Field mustard	cytosol	63.23	68.53
CDY55795	Canola	cytosol	62.58	67.83
CDY43263	Canola	cytosol	62.58	67.83
CDY37549	Canola	cytosol, extracellular	62.58	67.83
CDY34702	Canola	cytosol	62.58	67.83
Bra039150.1-P	Field mustard	cytosol	62.58	67.83
Bra021478.1-P	Field mustard	cytosol	62.58	67.83
AT3G02080.1	Thale cress	cytosol	62.58	67.83
CDY16820	Canola	cytosol	66.45	66.88
HORVU5Hr1G052240.8	Barley	plastid	78.71	65.24
GSMUA_Achr6P30810_001	Banana	cytosol	16.13	59.52
CDY42857	Canola	cytosol	51.61	55.17

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR038111	PFAM:PD003854
PFAM:PF01090	ScanProsite:PS00628	PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS
InterPro:Ribosomal_S19e_sf	SMART:SM01413	SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS5D01G174600	EnsemblPlants:TraesCS5D01G174600.1	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:273531950..273533410

Molecular Weight (calculated)

17071.5 Da

IEP (calculated)

10.457

GRAVY (calculated)

-0.446

Length

155 amino acids

Sequence
(BLAST)

001: MATVPAPAAE TAASTARTVK DVNPHEFVKA YSAHLKRSGK MELPEWVDIV KTARFKELPP SDADWYYIRA ASMARKIYLR QGIGIGGFQK IYGGRQRNGS
101: RPPHFCKSSG AVSRNILQEL QKMGIIDVDP KGGRLITSQG RRDLDQVAGT VPAEF

Best Arabidopsis Sequence Match ( AT5G61170.1 )
(BLAST)

001: MATGKTVKDV SPHEFVKAYA AHLKRSGKIE LPLWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGV
101: ARHILQQLQT MNIVDLDTKG GRKITSSGQR DLDQVAGRIA AAV

Arabidopsis Description

RPS19C40S ribosomal protein S19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.