Factsheet for Bra039150.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37549	Canola	cytosol, extracellular	100.0	100.0
Bra021478.1-P	Field mustard	cytosol	99.3	99.3
AT3G02080.1	Thale cress	cytosol	97.9	97.9
Bra001028.1-P	Field mustard	cytosol	97.2	97.2
Bra012980.1-P	Field mustard	cytosol	91.61	91.61
Bra029331.1-P	Field mustard	cytosol	77.62	90.24
Bra035939.1-P	Field mustard	cytosol	90.21	90.21
KRG93629	Soybean	endoplasmic reticulum	88.11	88.11
KRH18402	Soybean	nucleus	87.41	87.41
VIT_17s0000g06980.t01	Wine grape	cytosol	87.41	87.41
KRH62796	Soybean	endoplasmic reticulum	84.62	84.62
KRH30101	Soybean	cytosol, endoplasmic reticulum	83.22	83.22
VIT_01s0011g00680.t01	Wine grape	cytosol	83.22	81.51
Solyc12g039120.1.1	Tomato	nucleus	81.12	81.12
PGSC0003DMT400041313	Potato	cytosol	81.12	81.12
GSMUA_Achr9P09350_001	Banana	cytosol	79.72	80.85
Solyc03g115360.2.1	Tomato	nucleus	80.42	80.42
GSMUA_Achr6P34920_001	Banana	cytosol	79.02	80.14
PGSC0003DMT400063101	Potato	cytosol	79.72	79.72
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	81.12	78.38
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	73.43	72.41
GSMUA_Achr10P...	Banana	cytosol	78.32	72.26
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	72.03	71.03
KXG39115	Sorghum	cytosol	71.33	70.34
EES14121	Sorghum	cytosol	71.33	70.34
TraesCS5D01G174600.1	Wheat	cytosol	67.83	62.58
HORVU5Hr1G031630.1	Barley	cytosol	27.27	59.09
TraesCS5A01G170200.1	Wheat	cytosol	67.83	58.79
TraesCS5B01G167000.2	Wheat	cytosol	67.83	58.79
HORVU6Hr1G062080.1	Barley	cytosol	24.48	55.56
HORVU2Hr1G019060.1	Barley	cytosol	30.77	54.32
GSMUA_Achr6P30810_001	Banana	cytosol	15.38	52.38
HORVU6Hr1G064520.1	Barley	cytosol	28.67	51.25
HORVU1Hr1G061060.1	Barley	cytosol	26.57	49.35
HORVU5Hr1G052240.8	Barley	plastid	58.74	44.92

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	EnsemblPlantsGene:Bra039150	EnsemblPlants:Bra039150.1	EnsemblPlants:Bra039150.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR038111	UniProt:M4FDH9	PFAM:PD003854	PFAM:PF01090	ScanProsite:PS00628
PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS	InterPro:Ribosomal_S19e_sf	SMART:SM01413
SUPFAM:SSF46785	UniParc:UPI0001BA86B7	InterPro:WH_DNA-bd_sf	:	:	:

Description

AT3G02080 (E=1e-078) | 40S ribosomal protein S19 (RPS19A)

Coordinates

chrA05:+:23750206..23751128

Molecular Weight (calculated)

15817.1 Da

IEP (calculated)

10.669

GRAVY (calculated)

-0.464

Length

143 amino acids

Sequence
(BLAST)

001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPSWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MNIVEIDTKG GRRITSSGQR DLDQVAGRIA VEV

Best Arabidopsis Sequence Match ( AT3G02080.1 )
(BLAST)

001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPTWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MNIVELDTKG GRRITSSGQR DLDQVAGRIA VEP

Arabidopsis Description

RPS19A40S ribosomal protein S19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.