Factsheet for Zm00001d029543_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	95.17	95.17
GSMUA_Achr6P34920_001	Banana	cytosol	82.76	85.11
GSMUA_Achr9P09350_001	Banana	cytosol	82.07	84.4
KRH30101	Soybean	cytosol, endoplasmic reticulum	80.0	81.12
KRH62796	Soybean	endoplasmic reticulum	79.31	80.42
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	82.07	80.41
KRG93629	Soybean	endoplasmic reticulum	77.93	79.02
KRH18402	Soybean	nucleus	77.24	78.32
VIT_17s0000g06980.t01	Wine grape	cytosol	76.55	77.62
Solyc12g039120.1.1	Tomato	nucleus	75.86	76.92
Solyc03g115360.2.1	Tomato	nucleus	75.86	76.92
PGSC0003DMT400041313	Potato	cytosol	75.86	76.92
Bra035939.1-P	Field mustard	cytosol	74.48	75.52
PGSC0003DMT400063101	Potato	cytosol	74.48	75.52
GSMUA_Achr10P...	Banana	cytosol	80.0	74.84
CDX87203	Canola	cytosol	73.79	74.83
VIT_01s0011g00680.t01	Wine grape	cytosol	75.17	74.66
Bra012980.1-P	Field mustard	cytosol	73.1	74.13
AT5G61170.1	Thale cress	cytosol	73.1	74.13
CDY23083	Canola	cytosol	73.1	74.13
CDY02168	Canola	cytosol	73.1	74.13
Bra029331.1-P	Field mustard	cytosol	62.76	73.98
CDY47020	Canola	cytosol	72.41	73.43
AT5G15520.1	Thale cress	cytosol	71.72	72.73
CDY55795	Canola	cytosol	71.03	72.03
AT3G02080.1	Thale cress	cytosol	71.03	72.03
CDY43263	Canola	cytosol	71.03	72.03
CDY37549	Canola	cytosol, extracellular	71.03	72.03
CDY34702	Canola	cytosol	71.03	72.03
Bra039150.1-P	Field mustard	cytosol	71.03	72.03
Bra021478.1-P	Field mustard	cytosol	71.03	72.03
Bra001028.1-P	Field mustard	cytosol	70.34	71.33
CDY16820	Canola	cytosol	73.79	69.48
GSMUA_Achr6P30810_001	Banana	cytosol	17.93	61.9
CDY42857	Canola	cytosol	57.93	57.93

Protein Annotations

Gene3D:1.10.10.2700	EntrezGene:100192949	MapMan:17.1.3.1.21	UniProt:B4FD90	EMBL:BT035078	EMBL:EU961123
EMBL:EU962056	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR038111	ProteinID:ONL98940.1	PFAM:PD003854
PFAM:PF01090	ScanProsite:PS00628	PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS
InterPro:Ribosomal_S19e_sf	SMART:SM01413	SUPFAM:SSF46785	UniParc:UPI00017B669F	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d029543
EnsemblPlants:Zm00001d029543_P001	EnsemblPlants:Zm00001d029543_T001	:	:	:	:

Description

40S ribosomal protein S19-3

Coordinates

chr1:+:75646209..75648062

Molecular Weight (calculated)

16266.7 Da

IEP (calculated)

10.530

GRAVY (calculated)

-0.483

Length

145 amino acids

Sequence
(BLAST)

001: MAESTARTVK DVNPHEFVKA YSAHLKRSGK MELPEWVDIV KTARFKELPP YDPDWYYIRA ASIARKIYLR QGIGVGGFQK IYGGRQRNGS RPPHFCKSSG
101: AVARNILQQL QIMGIIDVDP KGGRLITNQG RRDLDQVAGR VAVEA

Best Arabidopsis Sequence Match ( AT5G61170.1 )
(BLAST)

001: MATGKTVKDV SPHEFVKAYA AHLKRSGKIE LPLWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGV
101: ARHILQQLQT MNIVDLDTKG GRKITSSGQR DLDQVAGRIA AAV

Arabidopsis Description

RPS19C40S ribosomal protein S19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.