CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55795	Canola	cytosol	100.0	100.0
CDY37549	Canola	cytosol, extracellular	100.0	100.0
CDY43263	Canola	cytosol	100.0	100.0
Bra021478.1-P	Field mustard	cytosol	99.3	99.3
AT3G02080.1	Thale cress	cytosol	97.9	97.9
CDY02168	Canola	cytosol	91.61	91.61
CDY23083	Canola	cytosol	91.61	91.61
CDX87203	Canola	cytosol	90.91	90.91
CDY47020	Canola	cytosol	90.91	90.91
KRG93629	Soybean	endoplasmic reticulum	88.11	88.11
VIT_17s0000g06980.t01	Wine grape	cytosol	87.41	87.41
KRH18402	Soybean	nucleus	87.41	87.41
KRH62796	Soybean	endoplasmic reticulum	84.62	84.62
CDY16820	Canola	cytosol	90.91	84.42
KRH30101	Soybean	cytosol, endoplasmic reticulum	83.22	83.22
VIT_01s0011g00680.t01	Wine grape	cytosol	83.22	81.51
Solyc12g039120.1.1	Tomato	nucleus	81.12	81.12
PGSC0003DMT400041313	Potato	cytosol	81.12	81.12
GSMUA_Achr9P09350_001	Banana	cytosol	79.72	80.85
Solyc03g115360.2.1	Tomato	nucleus	80.42	80.42
GSMUA_Achr6P34920_001	Banana	cytosol	79.02	80.14
PGSC0003DMT400063101	Potato	cytosol	79.72	79.72
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	81.12	78.38
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	73.43	72.41
CDY42857	Canola	cytosol	73.43	72.41
GSMUA_Achr10P...	Banana	cytosol	78.32	72.26
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	72.03	71.03
KXG39115	Sorghum	cytosol	71.33	70.34
EES14121	Sorghum	cytosol	71.33	70.34
TraesCS5D01G174600.1	Wheat	cytosol	67.83	62.58
HORVU5Hr1G031630.1	Barley	cytosol	27.27	59.09
TraesCS5A01G170200.1	Wheat	cytosol	67.83	58.79
TraesCS5B01G167000.2	Wheat	cytosol	67.83	58.79
HORVU6Hr1G062080.1	Barley	cytosol	24.48	55.56
HORVU2Hr1G019060.1	Barley	cytosol	30.77	54.32
GSMUA_Achr6P30810_001	Banana	cytosol	15.38	52.38
HORVU6Hr1G064520.1	Barley	cytosol	28.67	51.25
HORVU1Hr1G061060.1	Barley	cytosol	26.57	49.35
HORVU5Hr1G052240.8	Barley	plastid	58.74	44.92

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	GO:A0A078I2A8	UniProt:A0A078I2A8	EnsemblPlants:CDY34702	ProteinID:CDY34702
ProteinID:CDY34702.1	ProteinID:CDY37549.1	ProteinID:CDY43263.1	ProteinID:CDY55795.1	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00057219001	InterPro:IPR038111	PFAM:PD003854	PFAM:PF01090	ScanProsite:PS00628	PANTHER:PTHR11710
PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS	InterPro:Ribosomal_S19e_sf	SMART:SM01413	SUPFAM:SSF46785
UniParc:UPI0001BA86B7	InterPro:WH_DNA-bd_sf	:	:	:	:

Description

BnaA01g33230DBnaA01g33230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2A8]

Coordinates

chrLK032340:-:39510..40865

Molecular Weight (calculated)

15817.1 Da

IEP (calculated)

10.669

GRAVY (calculated)

-0.464

Length

143 amino acids

Sequence
(BLAST)

001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPSWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MNIVEIDTKG GRRITSSGQR DLDQVAGRIA VEV

Best Arabidopsis Sequence Match ( AT3G02080.1 )
(BLAST)

001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPTWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MNIVELDTKG GRRITSSGQR DLDQVAGRIA VEP

Arabidopsis Description

RPS19A40S ribosomal protein S19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.