Factsheet for Solyc12g039120.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041313	Potato	cytosol	100.0	100.0
Solyc03g115360.2.1	Tomato	nucleus	92.31	92.31
VIT_17s0000g06980.t01	Wine grape	cytosol	83.92	83.92
AT5G61170.1	Thale cress	cytosol	82.52	82.52
Bra012980.1-P	Field mustard	cytosol	81.82	81.82
KRG93629	Soybean	endoplasmic reticulum	81.82	81.82
CDY02168	Canola	cytosol	81.82	81.82
CDY23083	Canola	cytosol	81.82	81.82
GSMUA_Achr6P34920_001	Banana	cytosol	80.42	81.56
AT3G02080.1	Thale cress	cytosol	81.12	81.12
KRH18402	Soybean	nucleus	81.12	81.12
CDY55795	Canola	cytosol	81.12	81.12
CDY43263	Canola	cytosol	81.12	81.12
CDY37549	Canola	cytosol, extracellular	81.12	81.12
CDY34702	Canola	cytosol	81.12	81.12
Bra039150.1-P	Field mustard	cytosol	81.12	81.12
Bra035939.1-P	Field mustard	cytosol	81.12	81.12
Bra021478.1-P	Field mustard	cytosol	81.12	81.12
KRH62796	Soybean	endoplasmic reticulum	80.42	80.42
CDX87203	Canola	cytosol	80.42	80.42
CDY47020	Canola	cytosol	80.42	80.42
KRH30101	Soybean	cytosol, endoplasmic reticulum	80.42	80.42
GSMUA_Achr9P09350_001	Banana	cytosol	79.02	80.14
AT5G15520.1	Thale cress	cytosol	79.72	79.72
Bra001028.1-P	Field mustard	cytosol	79.72	79.72
VIT_01s0011g00680.t01	Wine grape	cytosol	80.42	78.77
Bra029331.1-P	Field mustard	cytosol	66.43	77.24
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	79.02	76.35
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	76.92	75.86
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	76.92	75.86
CDY16820	Canola	cytosol	80.42	74.68
KXG39115	Sorghum	cytosol	75.52	74.48
EES14121	Sorghum	cytosol	74.83	73.79
GSMUA_Achr10P...	Banana	cytosol	76.92	70.97
TraesCS5D01G174600.1	Wheat	cytosol	74.13	68.39
CDY42857	Canola	cytosol	67.83	66.9
TraesCS5A01G170200.1	Wheat	cytosol	74.13	64.24
TraesCS5B01G167000.2	Wheat	cytosol	74.13	64.24
HORVU6Hr1G062080.1	Barley	cytosol	26.57	60.32
HORVU5Hr1G031630.1	Barley	cytosol	27.27	59.09
HORVU2Hr1G019060.1	Barley	cytosol	32.17	56.79
GSMUA_Achr6P30810_001	Banana	cytosol	16.08	54.76
HORVU6Hr1G064520.1	Barley	cytosol	30.07	53.75
HORVU1Hr1G061060.1	Barley	cytosol	28.67	53.25
HORVU5Hr1G052240.8	Barley	plastid	65.73	50.27

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	GO:GO:0000028	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0022627	InterPro:IPR038111	UniProt:K4DEQ8	PFAM:PD003854	PFAM:PF01090
ScanProsite:PS00628	PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS	InterPro:Ribosomal_S19e_sf
SMART:SM01413	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc12g039120.1	EnsemblPlants:Solyc12g039120.1.1	UniParc:UPI000276A669	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:45441991..45443480

Molecular Weight (calculated)

15995.3 Da

IEP (calculated)

10.649

GRAVY (calculated)

-0.528

Length

143 amino acids

Sequence
(BLAST)

001: MEAARSVKDV SPHDFVKAYA AHLKRSGKME LPEWTDIVKT GKLKELAPYD ADWYYIRAAS MARKIYLRGG IGVGGFRRIY GGNQRNGSRP RHFCKSSGSV
101: ARHILQQLQN MNIIDFEPKG GRRITSSGQR DLDQVAGRIA VAC

Best Arabidopsis Sequence Match ( AT5G61170.1 )
(BLAST)

001: MATGKTVKDV SPHEFVKAYA AHLKRSGKIE LPLWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGV
101: ARHILQQLQT MNIVDLDTKG GRKITSSGQR DLDQVAGRIA AAV

Arabidopsis Description

RPS19C40S ribosomal protein S19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.