CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30101	Soybean	cytosol, endoplasmic reticulum	98.6	98.6
KRH18402	Soybean	nucleus	95.1	95.1
KRG93629	Soybean	endoplasmic reticulum	94.41	94.41
VIT_17s0000g06980.t01	Wine grape	cytosol	88.81	88.81
AT3G02080.1	Thale cress	cytosol	86.01	86.01
VIT_01s0011g00680.t01	Wine grape	cytosol	87.41	85.62
AT5G15520.1	Thale cress	cytosol	85.31	85.31
AT5G61170.1	Thale cress	cytosol	85.31	85.31
Bra012980.1-P	Field mustard	cytosol	85.31	85.31
CDY02168	Canola	cytosol	85.31	85.31
CDY23083	Canola	cytosol	85.31	85.31
GSMUA_Achr9P09350_001	Banana	cytosol	83.92	85.11
CDY34702	Canola	cytosol	84.62	84.62
CDY37549	Canola	cytosol, extracellular	84.62	84.62
Bra001028.1-P	Field mustard	cytosol	84.62	84.62
CDY43263	Canola	cytosol	84.62	84.62
CDY47020	Canola	cytosol	84.62	84.62
CDY55795	Canola	cytosol	84.62	84.62
Bra039150.1-P	Field mustard	cytosol	84.62	84.62
GSMUA_Achr6P34920_001	Banana	cytosol	83.22	84.4
Bra021478.1-P	Field mustard	cytosol	83.92	83.92
Bra029331.1-P	Field mustard	cytosol	72.03	83.74
CDX87203	Canola	cytosol	83.22	83.22
Bra035939.1-P	Field mustard	cytosol	82.52	82.52
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	84.62	81.76
Solyc12g039120.1.1	Tomato	nucleus	80.42	80.42
PGSC0003DMT400041313	Potato	cytosol	80.42	80.42
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	81.12	80.0
Solyc03g115360.2.1	Tomato	nucleus	79.72	79.72
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	80.42	79.31
EES14121	Sorghum	cytosol	80.42	79.31
KXG39115	Sorghum	cytosol	80.42	79.31
PGSC0003DMT400063101	Potato	cytosol	78.32	78.32
CDY16820	Canola	cytosol	83.22	77.27
GSMUA_Achr10P...	Banana	cytosol	81.82	75.48
TraesCS5D01G174600.1	Wheat	cytosol	76.92	70.97
HORVU6Hr1G062080.1	Barley	cytosol	30.07	68.25
CDY42857	Canola	cytosol	67.83	66.9
TraesCS5A01G170200.1	Wheat	cytosol	76.92	66.67
TraesCS5B01G167000.2	Wheat	cytosol	76.92	66.67
HORVU5Hr1G031630.1	Barley	cytosol	30.07	65.15
HORVU2Hr1G019060.1	Barley	cytosol	34.97	61.73
GSMUA_Achr6P30810_001	Banana	cytosol	17.48	59.52
HORVU1Hr1G061060.1	Barley	cytosol	31.47	58.44
HORVU6Hr1G064520.1	Barley	cytosol	32.17	57.5
HORVU5Hr1G052240.8	Barley	plastid	65.73	50.27

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	EMBL:ACUP02002360	EnsemblPlantsGene:GLYMA_04G132900	GO:GO:0000028	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627	UniProt:I1JW21	InterPro:IPR038111
EnsemblPlants:KRH62796	ProteinID:KRH62796	ProteinID:KRH62796.1	PFAM:PD003854	PFAM:PF01090	ScanProsite:PS00628
PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS	InterPro:Ribosomal_S19e_sf	SMART:SM01413
SUPFAM:SSF46785	UniParc:UPI00023C0413	InterPro:WH_DNA-bd_sf	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:18898788..18900730

Molecular Weight (calculated)

16005.4 Da

IEP (calculated)

10.827

GRAVY (calculated)

-0.493

Length

143 amino acids

Sequence
(BLAST)

001: MATARTVKDV SPHEFVKAYS SHLKRSGKME LPEWTDIVKT ARFKELAPYD PDWYYVRAAS MARKIYLRGG LGVGAFQRIY GGSKRNGSRP PHFCKSSGAI
101: ARHILQQLQN MNIIELDTKG GRKITSSGRR DLDQVAGRIV VAP

Best Arabidopsis Sequence Match ( AT3G02080.1 )
(BLAST)

001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPTWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MNIVELDTKG GRRITSSGQR DLDQVAGRIA VEP

Arabidopsis Description

RPS19A40S ribosomal protein S19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.