Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012980.1-P | Field mustard | cytosol | 97.9 | 97.9 |
| CDY02168 | Canola | cytosol | 97.9 | 97.9 |
| CDY23083 | Canola | cytosol | 97.9 | 97.9 |
| CDX87203 | Canola | cytosol | 95.8 | 95.8 |
| CDY47020 | Canola | cytosol | 95.8 | 95.8 |
| Bra035939.1-P | Field mustard | cytosol | 95.1 | 95.1 |
| AT3G02080.1 | Thale cress | cytosol | 93.01 | 93.01 |
| Bra029331.1-P | Field mustard | cytosol | 79.72 | 92.68 |
| AT5G15520.1 | Thale cress | cytosol | 92.31 | 92.31 |
| CDY16820 | Canola | cytosol | 95.8 | 88.96 |
| VIT_17s0000g06980.t01 | Wine grape | cytosol | 88.11 | 88.11 |
| KRG93629 | Soybean | endoplasmic reticulum | 86.01 | 86.01 |
| KRH62796 | Soybean | endoplasmic reticulum | 85.31 | 85.31 |
| KRH18402 | Soybean | nucleus | 85.31 | 85.31 |
| KRH30101 | Soybean | cytosol, endoplasmic reticulum | 85.31 | 85.31 |
| Solyc03g115360.2.1 | Tomato | nucleus | 84.62 | 84.62 |
| PGSC0003DMT400063101 | Potato | cytosol | 83.92 | 83.92 |
| Solyc12g039120.1.1 | Tomato | nucleus | 82.52 | 82.52 |
| PGSC0003DMT400041313 | Potato | cytosol | 82.52 | 82.52 |
| GSMUA_Achr9P09350_001 | Banana | cytosol | 79.02 | 80.14 |
| GSMUA_Achr6P34920_001 | Banana | cytosol | 78.32 | 79.43 |
| VIT_01s0011g00680.t01 | Wine grape | cytosol | 80.42 | 78.77 |
| CDY42857 | Canola | cytosol | 78.32 | 77.24 |
| GSMUA_Achr9P26780_001 | Banana | cytosol, plasma membrane | 79.72 | 77.03 |
| Zm00001d029543_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 74.13 | 73.1 |
| Zm00001d047296_P001 | Maize | cytosol, extracellular, mitochondrion | 73.43 | 72.41 |
| KXG39115 | Sorghum | cytosol | 72.73 | 71.72 |
| GSMUA_Achr10P... | Banana | cytosol | 77.62 | 71.61 |
| EES14121 | Sorghum | cytosol | 72.03 | 71.03 |
| TraesCS5D01G174600.1 | Wheat | cytosol | 71.33 | 65.81 |
| TraesCS5A01G170200.1 | Wheat | cytosol | 71.33 | 61.82 |
| TraesCS5B01G167000.2 | Wheat | cytosol | 71.33 | 61.82 |
| HORVU5Hr1G031630.1 | Barley | cytosol | 27.97 | 60.61 |
| HORVU6Hr1G062080.1 | Barley | cytosol | 25.87 | 58.73 |
| GSMUA_Achr6P30810_001 | Banana | cytosol | 16.78 | 57.14 |
| HORVU2Hr1G019060.1 | Barley | cytosol | 32.17 | 56.79 |
| HORVU6Hr1G064520.1 | Barley | cytosol | 30.07 | 53.75 |
| HORVU1Hr1G061060.1 | Barley | cytosol | 27.97 | 51.95 |
| HORVU5Hr1G052240.8 | Barley | plastid | 60.84 | 46.52 |
Protein Annotations
| Gene3D:1.10.10.2700 | MapMan:17.1.3.1.21 | EntrezGene:836238 | UniProt:A0A178USU3 | ProteinID:AED97430.1 | EMBL:AK175989 |
| ArrayExpress:AT5G61170 | EnsemblPlantsGene:AT5G61170 | RefSeq:AT5G61170 | TAIR:AT5G61170 | RefSeq:AT5G61170-TAIR-G | EnsemblPlants:AT5G61170.1 |
| TAIR:AT5G61170.1 | ProteinID:BAB10379.1 | EMBL:BT010524 | GO:GO:0000028 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0022626 | GO:GO:0022627 | GO:GO:0030529 |
| GO:GO:0042788 | InterPro:IPR038111 | RefSeq:NP_200925.1 | ProteinID:OAO96224.1 | PFAM:PD003854 | PFAM:PF01090 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | ScanProsite:PS00628 | PANTHER:PTHR11710 | PANTHER:PTHR11710:SF8 | UniProt:Q67ZX8 | UniProt:Q9FNP8 |
| InterPro:Ribosomal_S19e | InterPro:Ribosomal_S19e_CS | InterPro:Ribosomal_S19e_sf | SMART:SM01413 | SUPFAM:SSF46785 | UniParc:UPI0000132F4C |
| InterPro:WH_DNA-bd_sf | : | : | : | : | : |
Description
RPS19C40S ribosomal protein S19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP8]
Coordinates
chr5:+:24611032..24612564
Molecular Weight (calculated)
15698.1 Da
IEP (calculated)
10.828
GRAVY (calculated)
-0.396
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MATGKTVKDV SPHEFVKAYA AHLKRSGKIE LPLWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGV
101: ARHILQQLQT MNIVDLDTKG GRKITSSGQR DLDQVAGRIA AAV
101: ARHILQQLQT MNIVDLDTKG GRKITSSGQR DLDQVAGRIA AAV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.