Factsheet for Bra035939.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87203	Canola	cytosol	99.3	99.3
Bra012980.1-P	Field mustard	cytosol	96.5	96.5
AT5G61170.1	Thale cress	cytosol	95.1	95.1
CDY16820	Canola	cytosol	99.3	92.21
Bra001028.1-P	Field mustard	cytosol	91.61	91.61
Bra029331.1-P	Field mustard	cytosol	78.32	91.06
Bra021478.1-P	Field mustard	cytosol	90.21	90.21
Bra039150.1-P	Field mustard	cytosol	90.21	90.21
VIT_17s0000g06980.t01	Wine grape	cytosol	84.62	84.62
KRG93629	Soybean	endoplasmic reticulum	83.22	83.22
Solyc03g115360.2.1	Tomato	nucleus	83.22	83.22
KRH30101	Soybean	cytosol, endoplasmic reticulum	82.52	82.52
KRH18402	Soybean	nucleus	82.52	82.52
KRH62796	Soybean	endoplasmic reticulum	82.52	82.52
PGSC0003DMT400063101	Potato	cytosol	82.52	82.52
Solyc12g039120.1.1	Tomato	nucleus	81.12	81.12
PGSC0003DMT400041313	Potato	cytosol	81.12	81.12
GSMUA_Achr9P09350_001	Banana	cytosol	78.32	79.43
GSMUA_Achr6P34920_001	Banana	cytosol	78.32	79.43
VIT_01s0011g00680.t01	Wine grape	cytosol	79.72	78.08
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	79.02	76.35
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	75.52	74.48
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	74.83	73.79
KXG39115	Sorghum	cytosol	74.13	73.1
EES14121	Sorghum	cytosol	73.43	72.41
GSMUA_Achr10P...	Banana	cytosol	77.62	71.61
TraesCS5D01G174600.1	Wheat	cytosol	72.73	67.1
TraesCS5A01G170200.1	Wheat	cytosol	72.73	63.03
TraesCS5B01G167000.2	Wheat	cytosol	72.73	63.03
HORVU5Hr1G031630.1	Barley	cytosol	27.97	60.61
HORVU6Hr1G062080.1	Barley	cytosol	25.87	58.73
HORVU2Hr1G019060.1	Barley	cytosol	32.17	56.79
GSMUA_Achr6P30810_001	Banana	cytosol	16.08	54.76
HORVU6Hr1G064520.1	Barley	cytosol	30.07	53.75
HORVU1Hr1G061060.1	Barley	cytosol	27.97	51.95
HORVU5Hr1G052240.8	Barley	plastid	62.24	47.59

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	EnsemblPlantsGene:Bra035939	EnsemblPlants:Bra035939.1	EnsemblPlants:Bra035939.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR038111	UniProt:M4F4D9	PFAM:PD003854	PFAM:PF01090	ScanProsite:PS00628
PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS	InterPro:Ribosomal_S19e_sf	SMART:SM01413
SUPFAM:SSF46785	UniParc:UPI0002542016	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

AT5G61170 (E=9e-064) | 40S ribosomal protein S19 (RPS19C)

Coordinates

chrA09:+:2822474..2823676

Molecular Weight (calculated)

15715.0 Da

IEP (calculated)

10.628

GRAVY (calculated)

-0.460

Length

143 amino acids

Sequence
(BLAST)

001: MTGKTVKDVS PHEFVKAYAA HLKRSGKIEL PAWTDIVKTG KLKELAPYDP DWYYIRAASM ARKVYLRGGL GVGGFRRIYG GSKRNGSRPP HFCKSSGGVA
101: RHILQQLQTM NIVDLDTKGG RKITSSGERD LDQVAGRIAA EAI

Best Arabidopsis Sequence Match ( AT5G61170.1 )
(BLAST)

001: MATGKTVKDV SPHEFVKAYA AHLKRSGKIE LPLWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGV
101: ARHILQQLQT MNIVDLDTKG GRKITSSGQR DLDQVAGRIA AAV

Arabidopsis Description

RPS19C40S ribosomal protein S19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.