Factsheet for PGSC0003DMT400041313

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g039120.1.1	Tomato	nucleus	100.0	100.0
PGSC0003DMT400063101	Potato	cytosol	93.01	93.01
VIT_17s0000g06980.t01	Wine grape	cytosol	83.92	83.92
AT5G61170.1	Thale cress	cytosol	82.52	82.52
Bra012980.1-P	Field mustard	cytosol	81.82	81.82
KRG93629	Soybean	endoplasmic reticulum	81.82	81.82
CDY02168	Canola	cytosol	81.82	81.82
CDY23083	Canola	cytosol	81.82	81.82
GSMUA_Achr6P34920_001	Banana	cytosol	80.42	81.56
AT3G02080.1	Thale cress	cytosol	81.12	81.12
KRH18402	Soybean	nucleus	81.12	81.12
CDY55795	Canola	cytosol	81.12	81.12
CDY43263	Canola	cytosol	81.12	81.12
CDY37549	Canola	cytosol, extracellular	81.12	81.12
CDY34702	Canola	cytosol	81.12	81.12
Bra039150.1-P	Field mustard	cytosol	81.12	81.12
Bra035939.1-P	Field mustard	cytosol	81.12	81.12
Bra021478.1-P	Field mustard	cytosol	81.12	81.12
KRH62796	Soybean	endoplasmic reticulum	80.42	80.42
CDX87203	Canola	cytosol	80.42	80.42
CDY47020	Canola	cytosol	80.42	80.42
KRH30101	Soybean	cytosol, endoplasmic reticulum	80.42	80.42
GSMUA_Achr9P09350_001	Banana	cytosol	79.02	80.14
AT5G15520.1	Thale cress	cytosol	79.72	79.72
Bra001028.1-P	Field mustard	cytosol	79.72	79.72
VIT_01s0011g00680.t01	Wine grape	cytosol	80.42	78.77
Bra029331.1-P	Field mustard	cytosol	66.43	77.24
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	79.02	76.35
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	76.92	75.86
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	76.92	75.86
CDY16820	Canola	cytosol	80.42	74.68
KXG39115	Sorghum	cytosol	75.52	74.48
EES14121	Sorghum	cytosol	74.83	73.79
GSMUA_Achr10P...	Banana	cytosol	76.92	70.97
TraesCS5D01G174600.1	Wheat	cytosol	74.13	68.39
CDY42857	Canola	cytosol	67.83	66.9
TraesCS5A01G170200.1	Wheat	cytosol	74.13	64.24
TraesCS5B01G167000.2	Wheat	cytosol	74.13	64.24
HORVU6Hr1G062080.1	Barley	cytosol	26.57	60.32
HORVU5Hr1G031630.1	Barley	cytosol	27.27	59.09
HORVU2Hr1G019060.1	Barley	cytosol	32.17	56.79
GSMUA_Achr6P30810_001	Banana	cytosol	16.08	54.76
HORVU6Hr1G064520.1	Barley	cytosol	30.07	53.75
HORVU1Hr1G061060.1	Barley	cytosol	28.67	53.25
HORVU5Hr1G052240.8	Barley	plastid	65.73	50.27

Protein Annotations

Gene3D:1.10.10.2700	EntrezGene:102604160	MapMan:17.1.3.1.21	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR038111
UniProt:M1BB68	PFAM:PD003854	PFAM:PF01090	EnsemblPlantsGene:PGSC0003DMG400015992	PGSC:PGSC0003DMG400015992	EnsemblPlants:PGSC0003DMT400041313
ScanProsite:PS00628	PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS	InterPro:Ribosomal_S19e_sf
SMART:SM01413	SUPFAM:SSF46785	UniParc:UPI000276A669	InterPro:WH_DNA-bd_sf	RefSeq:XP_006364923.1	SEG:seg

Description

40S ribosomal protein S19 [Source:PGSC_GENE;Acc:PGSC0003DMG400015992]

Coordinates

chr12:-:33329323..33331316

Molecular Weight (calculated)

15995.3 Da

IEP (calculated)

10.649

GRAVY (calculated)

-0.528

Length

143 amino acids

Sequence
(BLAST)

001: MEAARSVKDV SPHDFVKAYA AHLKRSGKME LPEWTDIVKT GKLKELAPYD ADWYYIRAAS MARKIYLRGG IGVGGFRRIY GGNQRNGSRP RHFCKSSGSV
101: ARHILQQLQN MNIIDFEPKG GRRITSSGQR DLDQVAGRIA VAC

Best Arabidopsis Sequence Match ( AT5G61170.1 )
(BLAST)

001: MATGKTVKDV SPHEFVKAYA AHLKRSGKIE LPLWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGV
101: ARHILQQLQT MNIVDLDTKG GRKITSSGQR DLDQVAGRIA AAV

Arabidopsis Description

RPS19C40S ribosomal protein S19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.