CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62796	Soybean	endoplasmic reticulum	98.6	98.6
KRH18402	Soybean	nucleus	95.1	95.1
KRG93629	Soybean	endoplasmic reticulum	94.41	94.41
VIT_17s0000g06980.t01	Wine grape	cytosol	87.41	87.41
AT5G15520.1	Thale cress	cytosol	85.31	85.31
AT5G61170.1	Thale cress	cytosol	85.31	85.31
Bra012980.1-P	Field mustard	cytosol	85.31	85.31
CDY02168	Canola	cytosol	85.31	85.31
CDY23083	Canola	cytosol	85.31	85.31
AT3G02080.1	Thale cress	cytosol	84.62	84.62
CDY47020	Canola	cytosol	84.62	84.62
VIT_01s0011g00680.t01	Wine grape	cytosol	86.01	84.25
Bra029331.1-P	Field mustard	cytosol	72.03	83.74
GSMUA_Achr9P09350_001	Banana	cytosol	82.52	83.69
CDY37549	Canola	cytosol, extracellular	83.22	83.22
Bra039150.1-P	Field mustard	cytosol	83.22	83.22
CDX87203	Canola	cytosol	83.22	83.22
Bra021478.1-P	Field mustard	cytosol	83.22	83.22
Bra001028.1-P	Field mustard	cytosol	83.22	83.22
CDY55795	Canola	cytosol	83.22	83.22
CDY34702	Canola	cytosol	83.22	83.22
CDY43263	Canola	cytosol	83.22	83.22
GSMUA_Achr6P34920_001	Banana	cytosol	81.82	82.98
Bra035939.1-P	Field mustard	cytosol	82.52	82.52
PGSC0003DMT400041313	Potato	cytosol	80.42	80.42
Solyc12g039120.1.1	Tomato	nucleus	80.42	80.42
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	83.22	80.41
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	81.12	80.0
Solyc03g115360.2.1	Tomato	nucleus	79.72	79.72
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	80.42	79.31
KXG39115	Sorghum	cytosol	80.42	79.31
EES14121	Sorghum	cytosol	79.72	78.62
PGSC0003DMT400063101	Potato	cytosol	78.32	78.32
CDY16820	Canola	cytosol	83.22	77.27
GSMUA_Achr10P...	Banana	cytosol	80.42	74.19
TraesCS5D01G174600.1	Wheat	cytosol	77.62	71.61
HORVU6Hr1G062080.1	Barley	cytosol	30.07	68.25
TraesCS5B01G167000.2	Wheat	cytosol	77.62	67.27
TraesCS5A01G170200.1	Wheat	cytosol	77.62	67.27
CDY42857	Canola	cytosol	67.83	66.9
HORVU5Hr1G031630.1	Barley	cytosol	30.07	65.15
HORVU2Hr1G019060.1	Barley	cytosol	34.97	61.73
GSMUA_Achr6P30810_001	Banana	cytosol	17.48	59.52
HORVU1Hr1G061060.1	Barley	cytosol	31.47	58.44
HORVU6Hr1G064520.1	Barley	cytosol	32.17	57.5
HORVU5Hr1G052240.8	Barley	plastid	66.43	50.8

Protein Annotations

Gene3D:1.10.10.2700	EntrezGene:100305587	MapMan:17.1.3.1.21	EMBL:ACUP02006873	EMBL:BT089261	UniProt:C6SVR8
EnsemblPlantsGene:GLYMA_11G158500	GO:GO:0000028	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0022627	InterPro:IPR038111	EnsemblPlants:KRH30101	ProteinID:KRH30101	ProteinID:KRH30101.1	PFAM:PD003854
PFAM:PF01090	ScanProsite:PS00628	PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS
InterPro:Ribosomal_S19e_sf	SMART:SM01413	SUPFAM:SSF46785	UniParc:UPI0001B15836	InterPro:WH_DNA-bd_sf	:

Description

hypothetical protein

Coordinates

chr11:-:14178918..14180901

Molecular Weight (calculated)

15964.3 Da

IEP (calculated)

10.827

GRAVY (calculated)

-0.476

Length

143 amino acids

Sequence
(BLAST)

001: MATARTVKDV SPHEFVKAYS SHLKRSGKME LPEWTDIVKT ARFKELAPYD PDWYYVRAAS MARKIYLRGG LGVGAFQRIY GGSKRNGSRP PHFCKSSGAV
101: ARHILQQLQN MSIIELDTKG GRKITSSGRR DLDQVAGRIV VAP

Best Arabidopsis Sequence Match ( AT3G02080.1 )
(BLAST)

001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPTWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MNIVELDTKG GRRITSSGQR DLDQVAGRIA VEP

Arabidopsis Description

RPS19A40S ribosomal protein S19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.