Factsheet for GSMUA_Achr9P26780_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P09350_001	Banana	cytosol	93.24	97.87
GSMUA_Achr6P34920_001	Banana	cytosol	91.22	95.74
KRH62796	Soybean	endoplasmic reticulum	81.76	84.62
GSMUA_Achr10P...	Banana	cytosol	87.84	83.87
KRH30101	Soybean	cytosol, endoplasmic reticulum	80.41	83.22
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	81.08	82.76
KRG93629	Soybean	endoplasmic reticulum	79.73	82.52
VIT_17s0000g06980.t01	Wine grape	cytosol	79.73	82.52
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	80.41	82.07
KRH18402	Soybean	nucleus	79.05	81.82
EES14121	Sorghum	cytosol	79.73	81.38
KXG39115	Sorghum	cytosol	79.73	81.38
Bra039150.1-P	Field mustard	cytosol	78.38	81.12
CDY34702	Canola	cytosol	78.38	81.12
CDY37549	Canola	cytosol, extracellular	78.38	81.12
CDY43263	Canola	cytosol	78.38	81.12
Bra001028.1-P	Field mustard	cytosol	78.38	81.12
CDY55795	Canola	cytosol	78.38	81.12
VIT_01s0011g00680.t01	Wine grape	cytosol	79.73	80.82
AT3G02080.1	Thale cress	cytosol	77.7	80.42
AT5G15520.1	Thale cress	cytosol	77.7	80.42
Bra021478.1-P	Field mustard	cytosol	77.7	80.42
Solyc03g115360.2.1	Tomato	nucleus	77.7	80.42
AT5G61170.1	Thale cress	cytosol	77.03	79.72
PGSC0003DMT400041313	Potato	cytosol	76.35	79.02
PGSC0003DMT400063101	Potato	cytosol	76.35	79.02
Solyc12g039120.1.1	Tomato	nucleus	76.35	79.02
Bra035939.1-P	Field mustard	cytosol	76.35	79.02
CDY02168	Canola	cytosol	76.35	79.02
Bra012980.1-P	Field mustard	cytosol	76.35	79.02
CDY23083	Canola	cytosol	76.35	79.02
CDX87203	Canola	cytosol	75.68	78.32
Bra029331.1-P	Field mustard	cytosol	64.86	78.05
CDY47020	Canola	cytosol	73.65	76.22
TraesCS5D01G174600.1	Wheat	cytosol	77.7	74.19
CDY16820	Canola	cytosol	75.68	72.73
TraesCS5A01G170200.1	Wheat	cytosol	77.7	69.7
TraesCS5B01G167000.2	Wheat	cytosol	77.7	69.7
HORVU5Hr1G031630.1	Barley	cytosol	29.73	66.67
GSMUA_Achr6P30810_001	Banana	cytosol	18.92	66.67
HORVU6Hr1G062080.1	Barley	cytosol	28.38	66.67
CDY42857	Canola	cytosol	60.81	62.07
HORVU2Hr1G019060.1	Barley	cytosol	33.11	60.49
HORVU6Hr1G064520.1	Barley	cytosol	32.43	60.0
HORVU1Hr1G061060.1	Barley	cytosol	30.41	58.44
HORVU5Hr1G052240.8	Barley	plastid	66.22	52.41

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr9G26780_001	EnsemblPlants:GSMUA_Achr9P26780_001
EnsemblPlants:GSMUA_Achr9T26780_001	InterPro:IPR038111	UniProt:M0U3T5	PFAM:PD003854	PFAM:PF01090	ScanProsite:PS00628
PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS	InterPro:Ribosomal_S19e_sf	SMART:SM01413
SUPFAM:SSF46785	UniParc:UPI0002965575	InterPro:WH_DNA-bd_sf	:	:	:

Description

40S ribosomal protein S19 [Source:GMGC_GENE;Acc:GSMUA_Achr9G26780_001]

Coordinates

chr9:+:31113008..31116466

Molecular Weight (calculated)

16584.1 Da

IEP (calculated)

10.628

GRAVY (calculated)

-0.514

Length

148 amino acids

Sequence
(BLAST)

001: MATVENAVAK TVKDVSPHEF VKAYSAHLKR SGKMELPEWT DIVKTGRFKE LAPYDPDWYY IRAASMARKI YLRQGIGVGG FQKIYGGRKR NGSRPPHFCK
101: SSGAIARHIL QQLETMNIIE INPKGGRKIT SQGQRDLDQV AGRVSVLP

Best Arabidopsis Sequence Match ( AT3G02080.1 )
(BLAST)

001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPTWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MNIVELDTKG GRRITSSGQR DLDQVAGRIA VEP

Arabidopsis Description

RPS19A40S ribosomal protein S19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.