Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G02080.1 | Thale cress | cytosol | 95.8 | 95.8 |
| Bra001028.1-P | Field mustard | cytosol | 95.1 | 95.1 |
| AT5G61170.1 | Thale cress | cytosol | 92.31 | 92.31 |
| KRG93629 | Soybean | endoplasmic reticulum | 87.41 | 87.41 |
| VIT_17s0000g06980.t01 | Wine grape | cytosol | 87.41 | 87.41 |
| KRH18402 | Soybean | nucleus | 86.71 | 86.71 |
| KRH62796 | Soybean | endoplasmic reticulum | 85.31 | 85.31 |
| KRH30101 | Soybean | cytosol, endoplasmic reticulum | 85.31 | 85.31 |
| GSMUA_Achr9P09350_001 | Banana | cytosol | 79.72 | 80.85 |
| VIT_01s0011g00680.t01 | Wine grape | cytosol | 82.52 | 80.82 |
| Solyc03g115360.2.1 | Tomato | nucleus | 80.42 | 80.42 |
| GSMUA_Achr6P34920_001 | Banana | cytosol | 79.02 | 80.14 |
| Solyc12g039120.1.1 | Tomato | nucleus | 79.72 | 79.72 |
| PGSC0003DMT400063101 | Potato | cytosol | 79.72 | 79.72 |
| PGSC0003DMT400041313 | Potato | cytosol | 79.72 | 79.72 |
| GSMUA_Achr9P26780_001 | Banana | cytosol, plasma membrane | 80.42 | 77.7 |
| Zm00001d047296_P001 | Maize | cytosol, extracellular, mitochondrion | 74.13 | 73.1 |
| GSMUA_Achr10P... | Banana | cytosol | 79.02 | 72.9 |
| Zm00001d029543_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 72.73 | 71.72 |
| KXG39115 | Sorghum | cytosol | 72.03 | 71.03 |
| EES14121 | Sorghum | cytosol | 72.03 | 71.03 |
| TraesCS5D01G174600.1 | Wheat | cytosol | 69.93 | 64.52 |
| TraesCS5A01G170200.1 | Wheat | cytosol | 69.93 | 60.61 |
| TraesCS5B01G167000.2 | Wheat | cytosol | 69.93 | 60.61 |
| HORVU5Hr1G031630.1 | Barley | cytosol | 27.27 | 59.09 |
| HORVU6Hr1G062080.1 | Barley | cytosol | 24.48 | 55.56 |
| HORVU2Hr1G019060.1 | Barley | cytosol | 30.07 | 53.09 |
| GSMUA_Achr6P30810_001 | Banana | cytosol | 15.38 | 52.38 |
| HORVU6Hr1G064520.1 | Barley | cytosol | 28.67 | 51.25 |
| HORVU1Hr1G061060.1 | Barley | cytosol | 26.57 | 49.35 |
| HORVU5Hr1G052240.8 | Barley | plastid | 60.84 | 46.52 |
Protein Annotations
| Gene3D:1.10.10.2700 | MapMan:17.1.3.1.21 | EntrezGene:831405 | UniProt:A0A178UBC4 | ProteinID:AED92172.1 | EMBL:AK227960 |
| ArrayExpress:AT5G15520 | EnsemblPlantsGene:AT5G15520 | RefSeq:AT5G15520 | TAIR:AT5G15520 | RefSeq:AT5G15520-TAIR-G | EnsemblPlants:AT5G15520.1 |
| TAIR:AT5G15520.1 | EMBL:AY086505 | EMBL:BT004756 | ProteinID:CAC01751.1 | GO:GO:0000028 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0022627 |
| GO:GO:0030529 | InterPro:IPR038111 | RefSeq:NP_197056.1 | ProteinID:OAO90970.1 | PFAM:PD003854 | PFAM:PF01090 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | ScanProsite:PS00628 | PANTHER:PTHR11710 | PANTHER:PTHR11710:SF8 | UniProt:Q0WSH0 | UniProt:Q9LF30 |
| InterPro:Ribosomal_S19e | InterPro:Ribosomal_S19e_CS | InterPro:Ribosomal_S19e_sf | SMART:SM01413 | SUPFAM:SSF46785 | UniParc:UPI000000C46A |
| InterPro:WH_DNA-bd_sf | : | : | : | : | : |
Description
RPS19B40S ribosomal protein S19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF30]
Coordinates
chr5:-:5037021..5038754
Molecular Weight (calculated)
15818.1 Da
IEP (calculated)
10.715
GRAVY (calculated)
-0.471
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPLWTDIVKT GRLKELAPYD PDWYYIRAAS MARKIYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MSIVELDTKG GRRITSSGQR DLDQVAGRIA AES
101: ARHILQQLET MSIVELDTKG GRRITSSGQR DLDQVAGRIA AES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.