Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_17s0000g06980.t01 | Wine grape | cytosol | 86.3 | 88.11 |
| KRH62796 | Soybean | endoplasmic reticulum | 85.62 | 87.41 |
| KRH30101 | Soybean | cytosol, endoplasmic reticulum | 84.25 | 86.01 |
| KRH18402 | Soybean | nucleus | 82.88 | 84.62 |
| KRG93629 | Soybean | endoplasmic reticulum | 82.19 | 83.92 |
| AT3G02080.1 | Thale cress | cytosol | 81.51 | 83.22 |
| Bra039150.1-P | Field mustard | cytosol | 81.51 | 83.22 |
| CDY55795 | Canola | cytosol | 81.51 | 83.22 |
| CDY43263 | Canola | cytosol | 81.51 | 83.22 |
| CDY37549 | Canola | cytosol, extracellular | 81.51 | 83.22 |
| CDY34702 | Canola | cytosol | 81.51 | 83.22 |
| GSMUA_Achr9P09350_001 | Banana | cytosol | 80.14 | 82.98 |
| GSMUA_Achr6P34920_001 | Banana | cytosol | 80.14 | 82.98 |
| AT5G15520.1 | Thale cress | cytosol | 80.82 | 82.52 |
| Bra021478.1-P | Field mustard | cytosol | 80.82 | 82.52 |
| Bra001028.1-P | Field mustard | cytosol | 80.14 | 81.82 |
| PGSC0003DMT400041313 | Potato | cytosol | 78.77 | 80.42 |
| Solyc03g115360.2.1 | Tomato | nucleus | 78.77 | 80.42 |
| Solyc12g039120.1.1 | Tomato | nucleus | 78.77 | 80.42 |
| AT5G61170.1 | Thale cress | cytosol | 78.77 | 80.42 |
| GSMUA_Achr9P26780_001 | Banana | cytosol, plasma membrane | 80.82 | 79.73 |
| CDY23083 | Canola | cytosol | 78.08 | 79.72 |
| Bra012980.1-P | Field mustard | cytosol | 78.08 | 79.72 |
| Bra035939.1-P | Field mustard | cytosol | 78.08 | 79.72 |
| CDY02168 | Canola | cytosol | 78.08 | 79.72 |
| CDY47020 | Canola | cytosol | 78.08 | 79.72 |
| Bra029331.1-P | Field mustard | cytosol | 67.12 | 79.67 |
| CDX87203 | Canola | cytosol | 77.4 | 79.02 |
| PGSC0003DMT400063101 | Potato | cytosol | 77.4 | 79.02 |
| Zm00001d047296_P001 | Maize | cytosol, extracellular, mitochondrion | 76.71 | 77.24 |
| EES14121 | Sorghum | cytosol | 76.03 | 76.55 |
| KXG39115 | Sorghum | cytosol | 76.03 | 76.55 |
| Zm00001d029543_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 74.66 | 75.17 |
| GSMUA_Achr10P... | Banana | cytosol | 78.08 | 73.55 |
| CDY16820 | Canola | cytosol | 77.4 | 73.38 |
| TraesCS5D01G174600.1 | Wheat | cytosol | 72.6 | 68.39 |
| HORVU5Hr1G031630.1 | Barley | cytosol | 29.45 | 65.15 |
| HORVU6Hr1G062080.1 | Barley | cytosol | 28.08 | 65.08 |
| TraesCS5B01G167000.2 | Wheat | cytosol | 72.6 | 64.24 |
| TraesCS5A01G170200.1 | Wheat | cytosol | 72.6 | 64.24 |
| CDY42857 | Canola | cytosol | 63.7 | 64.14 |
| HORVU2Hr1G019060.1 | Barley | cytosol | 32.19 | 58.02 |
| GSMUA_Achr6P30810_001 | Banana | cytosol | 16.44 | 57.14 |
| HORVU6Hr1G064520.1 | Barley | cytosol | 30.82 | 56.25 |
| HORVU1Hr1G061060.1 | Barley | cytosol | 29.45 | 55.84 |
| HORVU5Hr1G052240.8 | Barley | plastid | 61.64 | 48.13 |
Protein Annotations
| Gene3D:1.10.10.2700 | EntrezGene:100266271 | wikigene:100266271 | MapMan:17.1.3.1.21 | UniProt:A5BGC5 | EMBL:AM458569 |
| ProteinID:CAN70140 | ProteinID:CAN70140.1 | ProteinID:CBI27271 | ProteinID:CBI27271.3 | EMBL:FN595752 | GO:GO:0000028 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0022627 | InterPro:IPR038111 |
| EntrezGene:LOC100266271 | wikigene:LOC100266271 | PFAM:PD003854 | PFAM:PF01090 | ScanProsite:PS00628 | PANTHER:PTHR11710 |
| PANTHER:PTHR11710:SF8 | InterPro:Ribosomal_S19e | InterPro:Ribosomal_S19e_CS | InterPro:Ribosomal_S19e_sf | SMART:SM01413 | SUPFAM:SSF46785 |
| TIGR:TC62554 | UniParc:UPI0001520CBA | ArrayExpress:VIT_01s0011g00680 | EnsemblPlantsGene:VIT_01s0011g00680 | EnsemblPlants:VIT_01s0011g00680.t01 | unigene:Vvi.4563 |
| InterPro:WH_DNA-bd_sf | RefSeq:XP_002269657 | RefSeq:XP_002269657.1 | : | : | : |
Description
No Description!
Coordinates
chr1:+:599218..602876
Molecular Weight (calculated)
16425.8 Da
IEP (calculated)
10.824
GRAVY (calculated)
-0.560
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: METAKAARTV KDVSPHEFVK AYSSHLKRSG KIELPHWTDI VKTATFKELA PYDPDWYYVR AASMARKIYL RQGLGVGGFR RIYGGSKRNG SRPPHFCKSS
101: GSIARHILQQ LEKMNIIEND PRGGRRITSS GQRDLDQVAG RIVVAL
101: GSIARHILQQ LEKMNIIEND PRGGRRITSS GQRDLDQVAG RIVVAL
001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPTWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MNIVELDTKG GRRITSSGQR DLDQVAGRIA VEP
101: ARHILQQLET MNIVELDTKG GRRITSSGQR DLDQVAGRIA VEP
Arabidopsis Description
RPS19A40S ribosomal protein S19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGA6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.