CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18402	Soybean	nucleus	99.3	99.3
KRH30101	Soybean	cytosol, endoplasmic reticulum	94.41	94.41
KRH62796	Soybean	endoplasmic reticulum	94.41	94.41
Bra001028.1-P	Field mustard	cytosol	88.11	88.11
CDY55795	Canola	cytosol	88.11	88.11
CDY43263	Canola	cytosol	88.11	88.11
Bra039150.1-P	Field mustard	cytosol	88.11	88.11
CDY37549	Canola	cytosol, extracellular	88.11	88.11
CDY34702	Canola	cytosol	88.11	88.11
VIT_17s0000g06980.t01	Wine grape	cytosol	87.41	87.41
AT3G02080.1	Thale cress	cytosol	87.41	87.41
Bra021478.1-P	Field mustard	cytosol	87.41	87.41
AT5G15520.1	Thale cress	cytosol	87.41	87.41
CDY23083	Canola	cytosol	86.01	86.01
CDY02168	Canola	cytosol	86.01	86.01
Bra012980.1-P	Field mustard	cytosol	86.01	86.01
AT5G61170.1	Thale cress	cytosol	86.01	86.01
CDY47020	Canola	cytosol	85.31	85.31
Bra029331.1-P	Field mustard	cytosol	72.73	84.55
CDX87203	Canola	cytosol	83.92	83.92
Bra035939.1-P	Field mustard	cytosol	83.22	83.22
GSMUA_Achr9P09350_001	Banana	cytosol	81.82	82.98
GSMUA_Achr6P34920_001	Banana	cytosol	81.12	82.27
VIT_01s0011g00680.t01	Wine grape	cytosol	83.92	82.19
Solyc12g039120.1.1	Tomato	nucleus	81.82	81.82
PGSC0003DMT400041313	Potato	cytosol	81.82	81.82
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	82.52	79.73
Solyc03g115360.2.1	Tomato	nucleus	79.72	79.72
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	79.72	78.62
PGSC0003DMT400063101	Potato	cytosol	78.32	78.32
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	79.02	77.93
CDY16820	Canola	cytosol	83.92	77.92
KXG39115	Sorghum	cytosol	78.32	77.24
EES14121	Sorghum	cytosol	78.32	77.24
GSMUA_Achr10P...	Banana	cytosol	79.72	73.55
TraesCS5D01G174600.1	Wheat	cytosol	74.83	69.03
CDY42857	Canola	cytosol	68.53	67.59
HORVU6Hr1G062080.1	Barley	cytosol	28.67	65.08
TraesCS5A01G170200.1	Wheat	cytosol	74.83	64.85
TraesCS5B01G167000.2	Wheat	cytosol	74.83	64.85
HORVU5Hr1G031630.1	Barley	cytosol	29.37	63.64
HORVU2Hr1G019060.1	Barley	cytosol	33.57	59.26
GSMUA_Achr6P30810_001	Banana	cytosol	16.78	57.14
HORVU6Hr1G064520.1	Barley	cytosol	31.47	56.25
HORVU1Hr1G061060.1	Barley	cytosol	30.07	55.84
HORVU5Hr1G052240.8	Barley	plastid	65.03	49.73

Protein Annotations

Gene3D:1.10.10.2700	EntrezGene:100527647	MapMan:17.1.3.1.21	EMBL:ACUP02011602	EMBL:BT092507	UniProt:C6T4Z6
EnsemblPlantsGene:GLYMA_19G028700	GO:GO:0000028	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0022627	InterPro:IPR038111	EnsemblPlants:KRG93629	ProteinID:KRG93629	ProteinID:KRG93629.1	PFAM:PD003854
PFAM:PF01090	ScanProsite:PS00628	PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e	InterPro:Ribosomal_S19e_CS
InterPro:Ribosomal_S19e_sf	SMART:SM01413	SUPFAM:SSF46785	UniParc:UPI0001B14F9D	InterPro:WH_DNA-bd_sf	:

Description

hypothetical protein

Coordinates

chr19:-:3572652..3574919

Molecular Weight (calculated)

15894.3 Da

IEP (calculated)

10.774

GRAVY (calculated)

-0.423

Length

143 amino acids

Sequence
(BLAST)

001: MATARTVKDV SPHDFVKAYA SHLKRSGKME LPEWTDIVKT AKFKELAPYD PDWYYIRAAS MARKIYLRGG LGVGAFQRIY GGSKRNGSRP PHFCKSSGAI
101: ARHILQQLQN MSIVEIDTKG GRKITSSGRR DLDQVAGRIV VAA

Best Arabidopsis Sequence Match ( AT3G02080.1 )
(BLAST)

001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPTWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MNIVELDTKG GRRITSSGQR DLDQVAGRIA VEP

Arabidopsis Description

RPS19A40S ribosomal protein S19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.