Factsheet for PGSC0003DMT400063101

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115360.2.1	Tomato	nucleus	97.2	97.2
PGSC0003DMT400041313	Potato	cytosol	93.01	93.01
AT5G61170.1	Thale cress	cytosol	83.92	83.92
VIT_17s0000g06980.t01	Wine grape	cytosol	83.22	83.22
Bra012980.1-P	Field mustard	cytosol	83.22	83.22
CDY02168	Canola	cytosol	83.22	83.22
CDY23083	Canola	cytosol	83.22	83.22
Bra035939.1-P	Field mustard	cytosol	82.52	82.52
CDX87203	Canola	cytosol	81.82	81.82
GSMUA_Achr6P34920_001	Banana	cytosol	80.42	81.56
CDY47020	Canola	cytosol	81.12	81.12
GSMUA_Achr9P09350_001	Banana	cytosol	79.02	80.14
AT5G15520.1	Thale cress	cytosol	79.72	79.72
CDY55795	Canola	cytosol	79.72	79.72
CDY43263	Canola	cytosol	79.72	79.72
CDY37549	Canola	cytosol, extracellular	79.72	79.72
CDY34702	Canola	cytosol	79.72	79.72
AT3G02080.1	Thale cress	cytosol	79.72	79.72
Bra039150.1-P	Field mustard	cytosol	79.72	79.72
Bra001028.1-P	Field mustard	cytosol	79.72	79.72
Bra021478.1-P	Field mustard	cytosol	79.72	79.72
Bra029331.1-P	Field mustard	cytosol	67.83	78.86
KRH62796	Soybean	endoplasmic reticulum	78.32	78.32
KRH30101	Soybean	cytosol, endoplasmic reticulum	78.32	78.32
KRG93629	Soybean	endoplasmic reticulum	78.32	78.32
KRH18402	Soybean	nucleus	77.62	77.62
VIT_01s0011g00680.t01	Wine grape	cytosol	79.02	77.4
GSMUA_Achr9P26780_001	Banana	cytosol, plasma membrane	79.02	76.35
CDY16820	Canola	cytosol	81.82	75.97
Zm00001d047296_P001	Maize	cytosol, extracellular, mitochondrion	75.52	74.48
Zm00001d029543_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	75.52	74.48
KXG39115	Sorghum	cytosol	74.13	73.1
EES14121	Sorghum	cytosol	73.43	72.41
GSMUA_Achr10P...	Banana	cytosol	78.32	72.26
TraesCS5D01G174600.1	Wheat	cytosol	73.43	67.74
CDY42857	Canola	cytosol	68.53	67.59
TraesCS5A01G170200.1	Wheat	cytosol	73.43	63.64
TraesCS5B01G167000.2	Wheat	cytosol	73.43	63.64
HORVU5Hr1G031630.1	Barley	cytosol	27.97	60.61
HORVU6Hr1G062080.1	Barley	cytosol	26.57	60.32
HORVU2Hr1G019060.1	Barley	cytosol	32.17	56.79
HORVU6Hr1G064520.1	Barley	cytosol	30.77	55.0
GSMUA_Achr6P30810_001	Banana	cytosol	16.08	54.76
HORVU1Hr1G061060.1	Barley	cytosol	28.67	53.25
HORVU5Hr1G052240.8	Barley	plastid	65.03	49.73

Protein Annotations

Gene3D:1.10.10.2700	MapMan:17.1.3.1.21	ProteinID:ABB87116	ProteinID:ABB87116.1	EMBL:DQ241845	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR038111	UniProt:M1CA24	PFAM:PD003854	PFAM:PF01090	EnsemblPlantsGene:PGSC0003DMG400024546
PGSC:PGSC0003DMG400024546	EnsemblPlants:PGSC0003DMT400063101	ScanProsite:PS00628	PANTHER:PTHR11710	PANTHER:PTHR11710:SF8	InterPro:Ribosomal_S19e
InterPro:Ribosomal_S19e_CS	InterPro:Ribosomal_S19e_sf	SMART:SM01413	SUPFAM:SSF46785	UniParc:UPI0002962426	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

40S ribosomal protein S19 [Source:PGSC_GENE;Acc:PGSC0003DMG400024546]

Coordinates

chr3:+:55243022..55244967

Molecular Weight (calculated)

16096.4 Da

IEP (calculated)

10.766

GRAVY (calculated)

-0.662

Length

143 amino acids

Sequence
(BLAST)

001: MEPPRSVKDV SPHEFVKAYA AHLKRSGKLE LPEWTDIVKT GKLKELAPYD PDWYYIRAAS MARKIYLRGG IGVGGFRRIY GGNQRNGSRP RHFCKSSGSV
101: ARHILQQLQT MNIIDFEPKG GRRITSNGQR DLDQVAGRIT AAN

Best Arabidopsis Sequence Match ( AT5G61170.1 )
(BLAST)

001: MATGKTVKDV SPHEFVKAYA AHLKRSGKIE LPLWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGV
101: ARHILQQLQT MNIVDLDTKG GRKITSSGQR DLDQVAGRIA AAV

Arabidopsis Description

RPS19C40S ribosomal protein S19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.