CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03569	Soybean	cytosol, nucleus	99.37	99.37
KRH37857	Soybean	cytosol	93.71	93.71
GSMUA_Achr6P35270_001	Banana	cytosol	91.19	91.19
Solyc12g042080.1.1	Tomato	nucleus	91.19	91.19
PGSC0003DMT400015118	Potato	cytosol	89.31	91.03
VIT_04s0008g06220.t01	Wine grape	cytosol	91.19	90.62
Solyc06g073790.2.1	Tomato	cytosol	90.57	90.57
Solyc06g073800.2.1	Tomato	cytosol, nucleus	90.57	90.57
VIT_11s0118g00680.t01	Wine grape	cytosol	90.57	90.0
GSMUA_Achr7P20890_001	Banana	cytosol	70.44	89.6
PGSC0003DMT400013305	Potato	cytosol	88.68	88.68
KRH75732	Soybean	cytosol, plastid	65.41	88.14
GSMUA_Achr6P22460_001	Banana	cytosol	88.68	88.12
Os04t0502300-01	Rice	cytosol, plasma membrane, plastid	87.42	86.88
EES12457	Sorghum	cytosol	87.42	86.88
AT5G23740.1	Thale cress	cytosol	86.79	86.79
AT3G48930.1	Thale cress	cytosol	86.79	86.25
AT4G30800.1	Thale cress	cytosol	86.16	86.16
CDX83060	Canola	cytosol	86.16	86.16
Bra029928.1-P	Field mustard	cytosol	86.16	86.16
Bra009706.1-P	Field mustard	cytosol	86.16	86.16
OQU85305	Sorghum	cytosol	86.16	85.62
CDX87158	Canola	cytosol	85.53	85.53
Bra026484.1-P	Field mustard	cytosol	85.53	85.53
Bra029381.1-P	Field mustard	cytosol	85.53	85.53
CDY69343	Canola	cytosol	85.53	85.53
CDY64707	Canola	cytosol	85.53	85.53
CDY46968	Canola	cytosol	85.53	85.53
CDY16867	Canola	cytosol	85.53	85.53
CDY05882	Canola	cytosol	85.53	85.53
TraesCS6D01G203900.1	Wheat	cytosol	86.16	85.09
Zm00001d003118_P001	Maize	cytosol	83.65	84.71
TraesCS6A01G231200.1	Wheat	cytosol	84.91	83.85
GSMUA_Achr4P20370_001	Banana	cytosol	60.38	83.48
PGSC0003DMT400015122	Potato	mitochondrion	52.83	83.17
KRH37858	Soybean	endoplasmic reticulum, extracellular	91.82	82.49
PGSC0003DMT400015117	Potato	cytosol	86.16	76.54
CDX96205	Canola	cytosol	69.18	75.34
CDY44261	Canola	cytosol	83.65	75.14
HORVU6Hr1G056610.3	Barley	mitochondrion	83.65	72.28
GSMUA_Achr9P09150_001	Banana	cytosol	60.38	69.06
CDX88047	Canola	vacuole	86.16	66.5
CDY64632	Canola	extracellular	86.16	59.57
GSMUA_Achr3P13330_001	Banana	plastid	60.38	45.71
CDX91453	Canola	cytosol	69.18	45.27
Bra018026.1-P	Field mustard	cytosol	77.36	43.93
CDX80385	Canola	cytosol	86.16	35.31

Protein Annotations

MapMan:17.1.3.1.12	Gene3D:2.40.50.1000	EntrezGene:547984	ProteinID:AAC14469.1	EMBL:BT089187	UniProt:C6SVJ4
EnsemblPlantsGene:GLYMA_13G165200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0019843	GO:GO:0022627	GO:GO:0030529	EnsemblPlants:KRH20240	ProteinID:KRH20240
ProteinID:KRH20240.1	EMBL:M31024	InterPro:NA-bd_OB-fold	UniProt:P17093	PFAM:PD001295	PFAM:PF00366
PFAM:PF16205	PRINTS:PR00973	ScanProsite:PS00056	PANTHER:PTHR10744	PANTHER:PTHR10744:SF17	InterPro:Ribosomal_S11_N
InterPro:Ribosomal_S17/S11	InterPro:Ribosomal_S17_CS	InterPro:Ribosomal_S17_arc-typ	SUPFAM:SSF50249	TIGRFAMs:TIGR03630	UniParc:UPI0000134C13
SEG:seg	:	:	:	:	:

Description

RPS11hypothetical protein

Coordinates

chr13:+:27997373..27999343

Molecular Weight (calculated)

17834.0 Da

IEP (calculated)

11.445

GRAVY (calculated)

-0.532

Length

159 amino acids

Sequence
(BLAST)

001: MAEQTEKAFL KQPKVFLSTK KTGKGKRPGK GGNRFWKSIG LGFKTPREAI EGTYIDKKCP FTGNVSIRGR ILAGTCHSAK MNRTIIVRRN YLHFIKKYQR
101: YEKRHSNIPA HISPAFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGSSS GAKKAFTGM

Best Arabidopsis Sequence Match ( AT5G23740.1 )
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV

Arabidopsis Description

RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.