Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- plastid 2
- cytosol 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64707 | Canola | cytosol | 52.14 | 91.82 |
| CDY05882 | Canola | cytosol | 51.79 | 91.19 |
| Bra029928.1-P | Field mustard | cytosol | 50.71 | 89.31 |
| Bra026484.1-P | Field mustard | cytosol | 48.93 | 86.16 |
| Bra029381.1-P | Field mustard | cytosol | 48.93 | 86.16 |
| Bra009706.1-P | Field mustard | cytosol | 48.57 | 85.53 |
| AT3G48930.1 | Thale cress | cytosol | 47.14 | 82.5 |
| KRH75732 | Soybean | cytosol, plastid | 34.64 | 82.2 |
| EES12457 | Sorghum | cytosol | 45.36 | 79.38 |
| Os04t0502300-01 | Rice | cytosol, plasma membrane, plastid | 45.0 | 78.75 |
| OQU85305 | Sorghum | cytosol | 45.0 | 78.75 |
| Solyc12g042080.1.1 | Tomato | nucleus | 44.29 | 77.99 |
| Solyc06g073800.2.1 | Tomato | cytosol, nucleus | 44.29 | 77.99 |
| Solyc06g073790.2.1 | Tomato | cytosol | 44.29 | 77.99 |
| KRH03569 | Soybean | cytosol, nucleus | 44.29 | 77.99 |
| Zm00001d003118_P001 | Maize | cytosol | 43.57 | 77.71 |
| PGSC0003DMT400015118 | Potato | cytosol | 43.21 | 77.56 |
| KRH37857 | Soybean | cytosol | 43.93 | 77.36 |
| KRH20240 | Soybean | nucleus | 43.93 | 77.36 |
| PGSC0003DMT400015122 | Potato | mitochondrion | 27.86 | 77.23 |
| VIT_11s0118g00680.t01 | Wine grape | cytosol | 43.93 | 76.88 |
| VIT_04s0008g06220.t01 | Wine grape | cytosol | 43.21 | 75.62 |
| PGSC0003DMT400013305 | Potato | cytosol | 42.86 | 75.47 |
| TraesCS6D01G203900.1 | Wheat | cytosol | 43.21 | 75.16 |
| GSMUA_Achr6P35270_001 | Banana | cytosol | 42.14 | 74.21 |
| TraesCS6A01G231200.1 | Wheat | cytosol | 42.5 | 73.91 |
| GSMUA_Achr6P22460_001 | Banana | cytosol | 41.07 | 71.88 |
| GSMUA_Achr7P20890_001 | Banana | cytosol | 31.43 | 70.4 |
| KRH37858 | Soybean | endoplasmic reticulum, extracellular | 43.93 | 69.49 |
| PGSC0003DMT400015117 | Potato | cytosol | 43.21 | 67.6 |
| GSMUA_Achr4P20370_001 | Banana | cytosol | 27.5 | 66.96 |
| HORVU6Hr1G056610.3 | Barley | mitochondrion | 43.21 | 65.76 |
| GSMUA_Achr9P09150_001 | Banana | cytosol | 29.29 | 58.99 |
| GSMUA_Achr3P13330_001 | Banana | plastid | 31.43 | 41.9 |
Protein Annotations
| MapMan:17.1.3.1.12 | Gene3D:2.40.50.1000 | EnsemblPlantsGene:Bra018026 | EnsemblPlants:Bra018026.1 | EnsemblPlants:Bra018026.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0003824 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030529 | GO:GO:0042578 | InterPro:IPR002013 |
| UniProt:M4DND9 | InterPro:NA-bd_OB-fold | PFAM:PD001295 | PFAM:PF00366 | PFAM:PF02383 | PFAM:PF16205 |
| PRINTS:PR00973 | ScanProsite:PS00056 | PANTHER:PTHR10744 | PANTHER:PTHR10744:SF17 | InterPro:Ribosomal_S11_N | InterPro:Ribosomal_S17/S11 |
| InterPro:Ribosomal_S17_CS | InterPro:Ribosomal_S17_arc-typ | InterPro:SAC_dom | SUPFAM:SSF50249 | TIGRFAMs:TIGR03630 | UniParc:UPI000253F294 |
| SEG:seg | : | : | : | : | : |
Description
AT5G23740 (E=8e-067) RPS11-BETA | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome
Coordinates
chrA06:+:9587431..9592761
Molecular Weight (calculated)
31144.5 Da
IEP (calculated)
10.729
GRAVY (calculated)
-0.516
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MENGGSTSSS PGSSSSSLQA SMQEFKLFET QSNLYMIGWN GNGVYRVLKI DCLDASELNL SEDSTAYTKK DTRRQQGHRR PQTGFIKLLG PYYMLVITER
101: REIGEICGHR VYEVSKSEII SLRNPSVLSN IANSRDKNSS KISGKGKRPG KGGNRFVKNI GLGFKTPREA TQGTYIDSKC PFTGTVSIRG RILAGTCHSA
201: KMQRTIIVRR NYLHFVKKYQ RYEKRHSNIP AHVSPCFRVK EGDHVIIGQC RPLSKTVRFN VLKVIPAGAS AFAKKAFTGA
101: REIGEICGHR VYEVSKSEII SLRNPSVLSN IANSRDKNSS KISGKGKRPG KGGNRFVKNI GLGFKTPREA TQGTYIDSKC PFTGTVSIRG RILAGTCHSA
201: KMQRTIIVRR NYLHFVKKYQ RYEKRHSNIP AHVSPCFRVK EGDHVIIGQC RPLSKTVRFN VLKVIPAGAS AFAKKAFTGA
001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV
Arabidopsis Description
RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.