Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G23740.1 | Thale cress | cytosol | 93.75 | 94.34 |
| AT4G30800.1 | Thale cress | cytosol | 92.5 | 93.08 |
| Bra029928.1-P | Field mustard | cytosol | 91.88 | 92.45 |
| CDX83060 | Canola | cytosol | 91.88 | 92.45 |
| CDY05882 | Canola | cytosol | 90.62 | 91.19 |
| CDY64707 | Canola | cytosol | 90.62 | 91.19 |
| EES12457 | Sorghum | cytosol | 87.5 | 87.5 |
| KRH03569 | Soybean | cytosol, nucleus | 86.88 | 87.42 |
| VIT_11s0118g00680.t01 | Wine grape | cytosol | 86.88 | 86.88 |
| Os04t0502300-01 | Rice | cytosol, plasma membrane, plastid | 86.88 | 86.88 |
| KRH20240 | Soybean | nucleus | 86.25 | 86.79 |
| KRH37857 | Soybean | cytosol | 86.25 | 86.79 |
| OQU85305 | Sorghum | cytosol | 86.25 | 86.25 |
| VIT_04s0008g06220.t01 | Wine grape | cytosol | 85.62 | 85.62 |
| Solyc12g042080.1.1 | Tomato | nucleus | 85.0 | 85.53 |
| Solyc06g073800.2.1 | Tomato | cytosol, nucleus | 85.0 | 85.53 |
| Solyc06g073790.2.1 | Tomato | cytosol | 85.0 | 85.53 |
| Zm00001d003118_P001 | Maize | cytosol | 83.75 | 85.35 |
| PGSC0003DMT400015118 | Potato | cytosol | 82.5 | 84.62 |
| GSMUA_Achr6P35270_001 | Banana | cytosol | 83.12 | 83.65 |
| TraesCS6D01G203900.1 | Wheat | cytosol | 83.75 | 83.23 |
| GSMUA_Achr7P20890_001 | Banana | cytosol | 65.0 | 83.2 |
| PGSC0003DMT400013305 | Potato | cytosol | 82.5 | 83.02 |
| TraesCS6A01G231200.1 | Wheat | cytosol | 82.5 | 81.99 |
| KRH75732 | Soybean | cytosol, plastid | 60.0 | 81.36 |
| GSMUA_Achr6P22460_001 | Banana | cytosol | 81.25 | 81.25 |
| PGSC0003DMT400015122 | Potato | mitochondrion | 50.0 | 79.21 |
| GSMUA_Achr4P20370_001 | Banana | cytosol | 56.88 | 79.13 |
| KRH37858 | Soybean | endoplasmic reticulum, extracellular | 83.75 | 75.71 |
| PGSC0003DMT400015117 | Potato | cytosol | 80.0 | 71.51 |
| HORVU6Hr1G056610.3 | Barley | mitochondrion | 81.88 | 71.2 |
| CDY64632 | Canola | extracellular | 91.25 | 63.48 |
| GSMUA_Achr9P09150_001 | Banana | cytosol | 54.38 | 62.59 |
| Bra018026.1-P | Field mustard | cytosol | 82.5 | 47.14 |
| GSMUA_Achr3P13330_001 | Banana | plastid | 56.88 | 43.33 |
Protein Annotations
| MapMan:17.1.3.1.12 | Gene3D:2.40.50.1000 | EntrezGene:824054 | UniProt:A0A178VH97 | ProteinID:AAC14454.1 | ProteinID:AEE78474.1 |
| ArrayExpress:AT3G48930 | EnsemblPlantsGene:AT3G48930 | RefSeq:AT3G48930 | TAIR:AT3G48930 | RefSeq:AT3G48930-TAIR-G | EnsemblPlants:AT3G48930.1 |
| TAIR:AT3G48930.1 | EMBL:AY059947 | EMBL:AY081614 | EMBL:AY088032 | Unigene:At.21301 | ProteinID:CAB62017.1 |
| Symbol:EMB1080 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0019538 | GO:GO:0019843 |
| GO:GO:0022626 | GO:GO:0022627 | GO:GO:0030312 | GO:GO:0030529 | EMBL:J05216 | InterPro:NA-bd_OB-fold |
| RefSeq:NP_190462.1 | ProteinID:OAP05134.1 | UniProt:P16181 | PFAM:PD001295 | PFAM:PF00366 | PFAM:PF16205 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR00973 | ScanProsite:PS00056 | PANTHER:PTHR10744 | PANTHER:PTHR10744:SF17 | InterPro:Ribosomal_S11_N | InterPro:Ribosomal_S17/S11 |
| InterPro:Ribosomal_S17_CS | InterPro:Ribosomal_S17_arc-typ | SUPFAM:SSF50249 | TIGRFAMs:TIGR03630 | UniParc:UPI0000000E53 | SEG:seg |
Description
RPS11A40S ribosomal protein S11-1 [Source:UniProtKB/Swiss-Prot;Acc:P16181]
Coordinates
chr3:-:18140771..18142281
Molecular Weight (calculated)
17958.1 Da
IEP (calculated)
11.257
GRAVY (calculated)
-0.512
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYVDKKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRD YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHIIIGQCR PLSKTVRFNV LKVIPAGSSS SFGKKAFTGM
101: YEKRHSNIPA HVSPCFRVKE GDHIIIGQCR PLSKTVRFNV LKVIPAGSSS SFGKKAFTGM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.