Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G48930.1 | Thale cress | cytosol | 93.08 | 92.5 |
| AT5G23740.1 | Thale cress | cytosol | 91.82 | 91.82 |
| EES12457 | Sorghum | cytosol | 88.05 | 87.5 |
| Os04t0502300-01 | Rice | cytosol, plasma membrane, plastid | 87.42 | 86.88 |
| KRH03569 | Soybean | cytosol, nucleus | 86.79 | 86.79 |
| VIT_11s0118g00680.t01 | Wine grape | cytosol | 86.79 | 86.25 |
| OQU85305 | Sorghum | cytosol | 86.79 | 86.25 |
| Solyc12g042080.1.1 | Tomato | nucleus | 86.16 | 86.16 |
| Solyc06g073800.2.1 | Tomato | cytosol, nucleus | 86.16 | 86.16 |
| Solyc06g073790.2.1 | Tomato | cytosol | 86.16 | 86.16 |
| KRH20240 | Soybean | nucleus | 86.16 | 86.16 |
| KRH37857 | Soybean | cytosol | 86.16 | 86.16 |
| Zm00001d003118_P001 | Maize | cytosol | 84.91 | 85.99 |
| PGSC0003DMT400015118 | Potato | cytosol | 84.28 | 85.9 |
| VIT_04s0008g06220.t01 | Wine grape | cytosol | 85.53 | 85.0 |
| PGSC0003DMT400013305 | Potato | cytosol | 84.91 | 84.91 |
| TraesCS6D01G203900.1 | Wheat | cytosol | 84.28 | 83.23 |
| GSMUA_Achr7P20890_001 | Banana | cytosol | 65.41 | 83.2 |
| GSMUA_Achr6P35270_001 | Banana | cytosol | 83.02 | 83.02 |
| TraesCS6A01G231200.1 | Wheat | cytosol | 83.02 | 81.99 |
| GSMUA_Achr6P22460_001 | Banana | cytosol | 80.5 | 80.0 |
| KRH75732 | Soybean | cytosol, plastid | 59.12 | 79.66 |
| GSMUA_Achr4P20370_001 | Banana | cytosol | 57.23 | 79.13 |
| PGSC0003DMT400015122 | Potato | mitochondrion | 49.69 | 78.22 |
| KRH37858 | Soybean | endoplasmic reticulum, extracellular | 83.65 | 75.14 |
| PGSC0003DMT400015117 | Potato | cytosol | 81.76 | 72.63 |
| HORVU6Hr1G056610.3 | Barley | mitochondrion | 82.39 | 71.2 |
| GSMUA_Achr9P09150_001 | Banana | cytosol | 53.46 | 61.15 |
| GSMUA_Achr3P13330_001 | Banana | plastid | 57.23 | 43.33 |
Protein Annotations
| MapMan:17.1.3.1.12 | Gene3D:2.40.50.1000 | EntrezGene:829203 | UniProt:A0A178V1P2 | ProteinID:AEE85810.1 | ArrayExpress:AT4G30800 |
| EnsemblPlantsGene:AT4G30800 | RefSeq:AT4G30800 | TAIR:AT4G30800 | RefSeq:AT4G30800-TAIR-G | EnsemblPlants:AT4G30800.1 | TAIR:AT4G30800.1 |
| EMBL:AY046037 | EMBL:AY091204 | ProteinID:CAA18213.2 | ProteinID:CAB79798.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019843 | GO:GO:0022627 |
| GO:GO:0030529 | InterPro:NA-bd_OB-fold | RefSeq:NP_194809.1 | UniProt:O65569 | ProteinID:OAP00119.1 | PFAM:PD001295 |
| PFAM:PF00366 | PFAM:PF16205 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00973 | ScanProsite:PS00056 | PANTHER:PTHR10744 | PANTHER:PTHR10744:SF17 |
| InterPro:Ribosomal_S11_N | InterPro:Ribosomal_S17/S11 | InterPro:Ribosomal_S17_CS | InterPro:Ribosomal_S17_arc-typ | SUPFAM:SSF50249 | TIGRFAMs:TIGR03630 |
| UniParc:UPI000000176A | SEG:seg | : | : | : | : |
Description
RPS11B40S ribosomal protein S11-2 [Source:UniProtKB/Swiss-Prot;Acc:O65569]
Coordinates
chr4:+:15000960..15002671
Molecular Weight (calculated)
17932.1 Da
IEP (calculated)
11.411
GRAVY (calculated)
-0.576
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPREAI EGTYIDQKCP FTGTVSIRGR ILSGTCHSAK MQRTIIVRRD YLHFVKKYRR
101: YEKRHSNIPA HVSPCFRVKE GDRVTIGQCR PLSKTVRFNV LKVIPAGSSS IGKKAFTGM
101: YEKRHSNIPA HVSPCFRVKE GDRVTIGQCR PLSKTVRFNV LKVIPAGSSS IGKKAFTGM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.