Factsheet for GSMUA_Achr3P13330_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P20370_001	Banana	cytosol	49.05	89.57
GSMUA_Achr6P35270_001	Banana	cytosol	47.14	62.26
VIT_04s0008g06220.t01	Wine grape	cytosol	46.67	61.25
GSMUA_Achr6P22460_001	Banana	cytosol	46.67	61.25
KRH03569	Soybean	cytosol, nucleus	46.19	61.01
VIT_11s0118g00680.t01	Wine grape	cytosol	46.19	60.62
Solyc06g073790.2.1	Tomato	cytosol	45.71	60.38
KRH37857	Soybean	cytosol	45.71	60.38
Solyc06g073800.2.1	Tomato	cytosol, nucleus	45.71	60.38
KRH20240	Soybean	nucleus	45.71	60.38
Solyc12g042080.1.1	Tomato	nucleus	45.71	60.38
PGSC0003DMT400015118	Potato	cytosol	44.29	59.62
EES12457	Sorghum	cytosol	44.29	58.12
PGSC0003DMT400013305	Potato	cytosol	43.81	57.86
AT5G23740.1	Thale cress	cytosol	43.81	57.86
Os04t0502300-01	Rice	cytosol, plasma membrane, plastid	43.81	57.5
AT4G30800.1	Thale cress	cytosol	43.33	57.23
Bra009706.1-P	Field mustard	cytosol	43.33	57.23
Bra029928.1-P	Field mustard	cytosol	43.33	57.23
TraesCS6D01G203900.1	Wheat	cytosol	43.81	57.14
AT3G48930.1	Thale cress	cytosol	43.33	56.88
OQU85305	Sorghum	cytosol	43.33	56.88
Bra026484.1-P	Field mustard	cytosol	42.86	56.6
Bra029381.1-P	Field mustard	cytosol	42.86	56.6
KRH37858	Soybean	endoplasmic reticulum, extracellular	47.62	56.5
Zm00001d003118_P001	Maize	cytosol	41.9	56.05
TraesCS6A01G231200.1	Wheat	cytosol	42.86	55.9
GSMUA_Achr7P20890_001	Banana	cytosol	31.9	53.6
CDX86999	Canola	mitochondrion	22.38	52.81
PGSC0003DMT400015117	Potato	cytosol	44.29	51.96
HORVU6Hr1G056610.3	Barley	mitochondrion	44.76	51.09
KRH75732	Soybean	cytosol, plastid	26.67	47.46
CDX87000	Canola	cytosol	10.95	45.1
GSMUA_Achr9P09150_001	Banana	cytosol	25.71	38.85
PGSC0003DMT400015122	Potato	mitochondrion	18.1	37.62
Bra018026.1-P	Field mustard	cytosol	41.9	31.43
GSMUA_Achr3P13340_001	Banana	cytosol	3.33	10.45
GSMUA_Achr4P20380_001	Banana	cytosol	3.33	10.45

Protein Annotations

MapMan:17.1.3.1.12	Gene3D:2.40.50.1000	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr3G13330_001	EnsemblPlants:GSMUA_Achr3P13330_001
EnsemblPlants:GSMUA_Achr3T13330_001	UniProt:M0SEA0	InterPro:NA-bd_OB-fold	PFAM:PD001295	PFAM:PF16205	PANTHER:PTHR10744
PANTHER:PTHR10744:SF17	InterPro:Ribosomal_S11_N	InterPro:Ribosomal_S17/S11	SUPFAM:SSF50249	UniParc:UPI0002958D79	SEG:seg

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G13330_001]

Coordinates

chr3:+:9791606..9796912

Molecular Weight (calculated)

23901.4 Da

IEP (calculated)

10.837

GRAVY (calculated)

-0.291

Length

210 amino acids

Sequence
(BLAST)

001: MPAPLSDSFS LYLHTRFPPK RSHVLVALNA ASLDHPRLHA KCFYKCLSCS DTIYHGLSWF CLSHAAPLRV RLQRSASMKP LMDRFDEVGH VSNRLIFVVQ
101: TEKAFLKQPK VFLCSKKSGK GKRPGKGGNR FWKSIGLGFK TPREAIEGTY IDKKCPFTGN VSIRGRILAG TCHSAKMNRT IIVRRNYLHY VKKYQRQARN
201: CPVVISNCYL

Best Arabidopsis Sequence Match ( AT3G48930.1 )
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYVDKKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRD YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHIIIGQCR PLSKTVRFNV LKVIPAGSSS SFGKKAFTGM

Arabidopsis Description

RPS11A40S ribosomal protein S11-1 [Source:UniProtKB/Swiss-Prot;Acc:P16181]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.