CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20240	Soybean	nucleus	99.37	99.37
KRH37857	Soybean	cytosol	94.34	94.34
Solyc12g042080.1.1	Tomato	nucleus	91.82	91.82
PGSC0003DMT400015118	Potato	cytosol	89.94	91.67
VIT_04s0008g06220.t01	Wine grape	cytosol	91.82	91.25
GSMUA_Achr6P35270_001	Banana	cytosol	91.19	91.19
Solyc06g073790.2.1	Tomato	cytosol	91.19	91.19
Solyc06g073800.2.1	Tomato	cytosol, nucleus	91.19	91.19
VIT_11s0118g00680.t01	Wine grape	cytosol	91.19	90.62
GSMUA_Achr7P20890_001	Banana	cytosol	71.07	90.4
PGSC0003DMT400013305	Potato	cytosol	89.31	89.31
GSMUA_Achr6P22460_001	Banana	cytosol	89.31	88.75
KRH75732	Soybean	cytosol, plastid	65.41	88.14
EES12457	Sorghum	cytosol	88.05	87.5
AT5G23740.1	Thale cress	cytosol	87.42	87.42
Os04t0502300-01	Rice	cytosol, plasma membrane, plastid	87.42	86.88
AT3G48930.1	Thale cress	cytosol	87.42	86.88
AT4G30800.1	Thale cress	cytosol	86.79	86.79
CDX83060	Canola	cytosol	86.79	86.79
Bra009706.1-P	Field mustard	cytosol	86.79	86.79
Bra029928.1-P	Field mustard	cytosol	86.79	86.79
OQU85305	Sorghum	cytosol	86.79	86.25
CDY05882	Canola	cytosol	86.16	86.16
Bra026484.1-P	Field mustard	cytosol	86.16	86.16
Bra029381.1-P	Field mustard	cytosol	86.16	86.16
CDY69343	Canola	cytosol	86.16	86.16
CDY64707	Canola	cytosol	86.16	86.16
CDY46968	Canola	cytosol	86.16	86.16
CDX87158	Canola	cytosol	86.16	86.16
CDY16867	Canola	cytosol	86.16	86.16
TraesCS6D01G203900.1	Wheat	cytosol	86.79	85.71
Zm00001d003118_P001	Maize	cytosol	84.28	85.35
TraesCS6A01G231200.1	Wheat	cytosol	85.53	84.47
GSMUA_Achr4P20370_001	Banana	cytosol	61.01	84.35
PGSC0003DMT400015122	Potato	mitochondrion	52.83	83.17
KRH37858	Soybean	endoplasmic reticulum, extracellular	92.45	83.05
PGSC0003DMT400015117	Potato	cytosol	86.79	77.09
CDY44261	Canola	cytosol	84.28	75.71
CDX96205	Canola	cytosol	69.18	75.34
HORVU6Hr1G056610.3	Barley	mitochondrion	84.28	72.83
GSMUA_Achr9P09150_001	Banana	cytosol	60.38	69.06
CDX88047	Canola	vacuole	86.79	66.99
CDY64632	Canola	extracellular	86.79	60.0
GSMUA_Achr3P13330_001	Banana	plastid	61.01	46.19
CDX91453	Canola	cytosol	69.81	45.68
Bra018026.1-P	Field mustard	cytosol	77.99	44.29
CDX80385	Canola	cytosol	86.79	35.57

Protein Annotations

EntrezGene:100784140	MapMan:17.1.3.1.12	Gene3D:2.40.50.1000	EMBL:ACUP02010352	EnsemblPlantsGene:GLYMA_17G105900	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	UniProt:I1MU00	EnsemblPlants:KRH03569
ProteinID:KRH03569	ProteinID:KRH03569.1	InterPro:NA-bd_OB-fold	PFAM:PD001295	PFAM:PF00366	PFAM:PF16205
PRINTS:PR00973	ScanProsite:PS00056	PANTHER:PTHR10744	PANTHER:PTHR10744:SF17	InterPro:Ribosomal_S11_N	InterPro:Ribosomal_S17/S11
InterPro:Ribosomal_S17_CS	InterPro:Ribosomal_S17_arc-typ	SUPFAM:SSF50249	TIGRFAMs:TIGR03630	UniParc:UPI000233DF3D	SEG:seg

Description

hypothetical protein

Coordinates

chr17:-:8304616..8306559

Molecular Weight (calculated)

17820.0 Da

IEP (calculated)

11.445

GRAVY (calculated)

-0.533

Length

159 amino acids

Sequence
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK KTGKGKRPGK GGNRFWKSIG LGFKTPREAI EGTYIDKKCP FTGNVSIRGR ILAGTCHSAK MNRTIIVRRN YLHFIKKYQR
101: YEKRHSNIPA HISPAFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGSSS GAKKAFTGM

Best Arabidopsis Sequence Match ( AT5G23740.1 )
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV

Arabidopsis Description

RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.