CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009706.1-P	Field mustard	cytosol	77.18	100.0
CDY46968	Canola	cytosol	76.21	98.74
CDX87158	Canola	cytosol	75.24	97.48
CDY69343	Canola	cytosol	75.24	97.48
CDX87000	Canola	cytosol	23.79	96.08
CDY16867	Canola	cytosol	73.79	95.6
CDX83060	Canola	cytosol	73.3	94.97
AT5G23740.1	Thale cress	cytosol	73.3	94.97
CDY05882	Canola	cytosol	72.33	93.71
CDY64707	Canola	cytosol	72.33	93.71
KRH37857	Soybean	cytosol	67.96	88.05
VIT_11s0118g00680.t01	Wine grape	cytosol	67.96	87.5
EES12457	Sorghum	cytosol	67.48	86.88
KRH03569	Soybean	cytosol, nucleus	66.99	86.79
CDY44261	Canola	cytosol	74.27	86.44
VIT_04s0008g06220.t01	Wine grape	cytosol	66.99	86.25
KRH20240	Soybean	nucleus	66.5	86.16
Os04t0502300-01	Rice	cytosol, plasma membrane, plastid	66.5	85.62
OQU85305	Sorghum	cytosol	66.5	85.62
CDX96205	Canola	cytosol	60.68	85.62
Solyc12g042080.1.1	Tomato	nucleus	65.53	84.91
Solyc06g073800.2.1	Tomato	cytosol, nucleus	65.53	84.91
Solyc06g073790.2.1	Tomato	cytosol	65.53	84.91
Zm00001d003118_P001	Maize	cytosol	64.56	84.71
PGSC0003DMT400015118	Potato	cytosol	63.59	83.97
KRH75732	Soybean	cytosol, plastid	47.57	83.05
TraesCS6A01G231200.1	Wheat	cytosol	64.56	82.61
TraesCS6D01G203900.1	Wheat	cytosol	64.56	82.61
PGSC0003DMT400013305	Potato	cytosol	63.59	82.39
PGSC0003DMT400015122	Potato	mitochondrion	38.84	79.21
KRH37858	Soybean	endoplasmic reticulum, extracellular	66.02	76.84
PGSC0003DMT400015117	Potato	cytosol	61.65	70.95
HORVU6Hr1G056610.3	Barley	mitochondrion	63.11	70.65
CDY64632	Canola	extracellular	75.24	67.39
CDX86999	Canola	mitochondrion	24.76	57.3
CDX91453	Canola	cytosol	63.11	53.5
CDX80385	Canola	cytosol	81.07	43.04

Protein Annotations

MapMan:17.1.3.1.12	Gene3D:2.40.50.1000	GO:A0A078DGJ1	EnsemblPlants:CDX88047	ProteinID:CDX88047	ProteinID:CDX88047.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00147459001	InterPro:NA-bd_OB-fold	PFAM:PD001295	PFAM:PF00366
PFAM:PF16205	PRINTS:PR00973	ScanProsite:PS00056	PANTHER:PTHR10744	PANTHER:PTHR10744:SF17	InterPro:Ribosomal_S11_N
InterPro:Ribosomal_S17/S11	InterPro:Ribosomal_S17_CS	InterPro:Ribosomal_S17_arc-typ	SUPFAM:SSF50249	TIGRFAMs:TIGR03630	TMHMM:TMhelix
UniParc:UPI0004EE657C	SEG:seg	:	:	:	:

Description

BnaA06g26380D

Coordinates

chrLK031854:-:286580..288146

Molecular Weight (calculated)

23424.7 Da

IEP (calculated)

11.003

GRAVY (calculated)

-0.489

Length

206 amino acids

Sequence
(BLAST)

001: MWKTNQRKGF IYTFVLHCIS FTLILPQSII SGEQQQQEQE QEQQPVAMAE QTEKAFLKQP KVFLSSKKSG KGKRPGKGGN RFWKNIGLGF KTPRDAIDGH
101: YIDKKCPFTG TVSVRGRILA GTCHSAKMQR TIIVRRNYLH FVKKYQRYEK RHSNIPAHVS PCFRVKEGDH VIIGQCRPLS KTVRFNVLKV IPAGASAFAK
201: KAFTGM

Best Arabidopsis Sequence Match ( AT3G48930.1 )
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYVDKKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRD YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHIIIGQCR PLSKTVRFNV LKVIPAGSSS SFGKKAFTGM

Arabidopsis Description

RPS11A40S ribosomal protein S11-1 [Source:UniProtKB/Swiss-Prot;Acc:P16181]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.