Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029381.1-P | Field mustard | cytosol | 87.01 | 96.86 |
| CDY46968 | Canola | cytosol | 87.01 | 96.86 |
| CDX87158 | Canola | cytosol | 85.88 | 95.6 |
| CDY69343 | Canola | cytosol | 85.88 | 95.6 |
| CDX83060 | Canola | cytosol | 84.75 | 94.34 |
| CDY16867 | Canola | cytosol | 84.75 | 94.34 |
| CDX87000 | Canola | cytosol | 27.12 | 94.12 |
| AT5G23740.1 | Thale cress | cytosol | 83.62 | 93.08 |
| CDY05882 | Canola | cytosol | 83.05 | 92.45 |
| CDY64707 | Canola | cytosol | 83.05 | 92.45 |
| CDX96205 | Canola | cytosol | 70.62 | 85.62 |
| KRH37857 | Soybean | cytosol | 76.84 | 85.53 |
| VIT_11s0118g00680.t01 | Wine grape | cytosol | 76.84 | 85.0 |
| EES12457 | Sorghum | cytosol | 76.84 | 85.0 |
| KRH03569 | Soybean | cytosol, nucleus | 75.71 | 84.28 |
| Os04t0502300-01 | Rice | cytosol, plasma membrane, plastid | 75.71 | 83.75 |
| VIT_04s0008g06220.t01 | Wine grape | cytosol | 75.71 | 83.75 |
| OQU85305 | Sorghum | cytosol | 75.71 | 83.75 |
| KRH20240 | Soybean | nucleus | 75.14 | 83.65 |
| Zm00001d003118_P001 | Maize | cytosol | 73.45 | 82.8 |
| Solyc06g073790.2.1 | Tomato | cytosol | 74.01 | 82.39 |
| Solyc06g073800.2.1 | Tomato | cytosol, nucleus | 74.01 | 82.39 |
| Solyc12g042080.1.1 | Tomato | nucleus | 74.01 | 82.39 |
| PGSC0003DMT400015118 | Potato | cytosol | 71.75 | 81.41 |
| KRH75732 | Soybean | cytosol, plastid | 54.24 | 81.36 |
| TraesCS6D01G203900.1 | Wheat | cytosol | 73.45 | 80.75 |
| TraesCS6A01G231200.1 | Wheat | cytosol | 73.45 | 80.75 |
| PGSC0003DMT400013305 | Potato | cytosol | 71.75 | 79.87 |
| KRH37858 | Soybean | endoplasmic reticulum, extracellular | 78.53 | 78.53 |
| PGSC0003DMT400015122 | Potato | mitochondrion | 44.07 | 77.23 |
| CDX88047 | Canola | vacuole | 86.44 | 74.27 |
| PGSC0003DMT400015117 | Potato | cytosol | 71.75 | 70.95 |
| HORVU6Hr1G056610.3 | Barley | mitochondrion | 73.45 | 70.65 |
| CDY64632 | Canola | extracellular | 84.18 | 64.78 |
| CDX86999 | Canola | mitochondrion | 27.68 | 55.06 |
| CDX91453 | Canola | cytosol | 68.36 | 49.79 |
| CDX80385 | Canola | cytosol | 85.88 | 39.18 |
Protein Annotations
| MapMan:17.1.3.1.12 | Gene3D:2.40.50.1000 | GO:A0A078I337 | UniProt:A0A078I337 | EnsemblPlants:CDY44261 | ProteinID:CDY44261 |
| ProteinID:CDY44261.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00079772001 | InterPro:NA-bd_OB-fold |
| PFAM:PD001295 | PFAM:PF00366 | PFAM:PF16205 | PRINTS:PR00973 | ScanProsite:PS00056 | PANTHER:PTHR10744 |
| PANTHER:PTHR10744:SF17 | InterPro:Ribosomal_S11_N | InterPro:Ribosomal_S17/S11 | InterPro:Ribosomal_S17_CS | InterPro:Ribosomal_S17_arc-typ | SUPFAM:SSF50249 |
| TIGRFAMs:TIGR03630 | UniParc:UPI0004EEA51C | SEG:seg | : | : | : |
Description
BnaC02g41560DBnaC02g41560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I337]
Coordinates
chrLK032584:-:1004..4357
Molecular Weight (calculated)
19966.8 Da
IEP (calculated)
11.362
GRAVY (calculated)
-0.335
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFTKIMNKN THDILILCVL LQTEKAFLKQ PKVFLSSKKS GKGKRPGKGG NRFWKNIGLG FKTPRDAIDG TYIDRKCPFT GTVSVRGRIL AGTCHSAKMQ
101: RTIVVRRNYL HFVKKYQRYE KRHSNIPAHV SPCFRVKEGD HVIIGQCRPL SKTVRFNVLK VIPAGASAFA KKAFTGM
101: RTIVVRRNYL HFVKKYQRYE KRHSNIPAHV SPCFRVKEGD HVIIGQCRPL SKTVRFNVLK VIPAGASAFA KKAFTGM
001: MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYVDKKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRD YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHIIIGQCR PLSKTVRFNV LKVIPAGSSS SFGKKAFTGM
101: YEKRHSNIPA HVSPCFRVKE GDHIIIGQCR PLSKTVRFNV LKVIPAGSSS SFGKKAFTGM
Arabidopsis Description
RPS11A40S ribosomal protein S11-1 [Source:UniProtKB/Swiss-Prot;Acc:P16181]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.