CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64707	Canola	cytosol	99.37	99.37
CDX83060	Canola	cytosol	97.48	97.48
CDX87000	Canola	cytosol	30.82	96.08
CDX87158	Canola	cytosol	94.34	94.34
CDY46968	Canola	cytosol	94.34	94.34
CDY69343	Canola	cytosol	94.34	94.34
CDY16867	Canola	cytosol	93.08	93.08
AT3G48930.1	Thale cress	cytosol	91.19	90.62
EES12457	Sorghum	cytosol	88.05	87.5
Os04t0502300-01	Rice	cytosol, plasma membrane, plastid	86.79	86.25
OQU85305	Sorghum	cytosol	86.79	86.25
KRH03569	Soybean	cytosol, nucleus	86.16	86.16
KRH37857	Soybean	cytosol	85.53	85.53
KRH20240	Soybean	nucleus	85.53	85.53
Zm00001d003118_P001	Maize	cytosol	84.28	85.35
VIT_11s0118g00680.t01	Wine grape	cytosol	85.53	85.0
Solyc12g042080.1.1	Tomato	nucleus	84.91	84.91
Solyc06g073790.2.1	Tomato	cytosol	84.91	84.91
Solyc06g073800.2.1	Tomato	cytosol, nucleus	84.91	84.91
PGSC0003DMT400015118	Potato	cytosol	83.02	84.62
VIT_04s0008g06220.t01	Wine grape	cytosol	84.28	83.75
TraesCS6D01G203900.1	Wheat	cytosol	84.28	83.23
CDY44261	Canola	cytosol	92.45	83.05
KRH75732	Soybean	cytosol, plastid	61.64	83.05
CDX96205	Canola	cytosol	76.1	82.88
PGSC0003DMT400013305	Potato	cytosol	82.39	82.39
TraesCS6A01G231200.1	Wheat	cytosol	83.02	81.99
PGSC0003DMT400015122	Potato	mitochondrion	49.69	78.22
KRH37858	Soybean	endoplasmic reticulum, extracellular	83.02	74.58
CDX88047	Canola	vacuole	93.71	72.33
PGSC0003DMT400015117	Potato	cytosol	79.87	70.95
HORVU6Hr1G056610.3	Barley	mitochondrion	81.76	70.65
CDY64632	Canola	extracellular	97.48	67.39
CDX86999	Canola	mitochondrion	30.19	53.93
Bra018026.1-P	Field mustard	cytosol	91.19	51.79
CDX91453	Canola	cytosol	77.36	50.62
CDX80385	Canola	cytosol	93.71	38.4

Protein Annotations

MapMan:17.1.3.1.12	Gene3D:2.40.50.1000	GO:A0A078EXZ4	EnsemblPlants:CDY05882	ProteinID:CDY05882	ProteinID:CDY05882.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00121682001	InterPro:NA-bd_OB-fold	PFAM:PD001295	PFAM:PF00366
PFAM:PF16205	PRINTS:PR00973	ScanProsite:PS00056	PANTHER:PTHR10744	PANTHER:PTHR10744:SF17	InterPro:Ribosomal_S11_N
InterPro:Ribosomal_S17/S11	InterPro:Ribosomal_S17_CS	InterPro:Ribosomal_S17_arc-typ	SUPFAM:SSF50249	TIGRFAMs:TIGR03630	UniParc:UPI0004EBA566
SEG:seg	:	:	:	:	:

Description

BnaC08g20590D

Coordinates

chrLK031966:-:282173..283495

Molecular Weight (calculated)

17665.7 Da

IEP (calculated)

11.406

GRAVY (calculated)

-0.409

Length

159 amino acids

Sequence
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFVKNIG LGFKTPREAS QGTYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FAKKAFTGA

Best Arabidopsis Sequence Match ( AT5G23740.1 )
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV

Arabidopsis Description

RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.