CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P20370_001	Banana	cytosol	53.93	41.74
CDY46968	Canola	cytosol	56.18	31.45
CDX83060	Canola	cytosol	55.06	30.82
CDX87158	Canola	cytosol	55.06	30.82
CDY69343	Canola	cytosol	55.06	30.82
CDY16867	Canola	cytosol	55.06	30.82
CDY05882	Canola	cytosol	53.93	30.19
CDY64707	Canola	cytosol	53.93	30.19
EES12457	Sorghum	cytosol	51.69	28.75
Os04t0502300-01	Rice	cytosol, plasma membrane, plastid	50.56	28.12
Zm00001d003118_P001	Maize	cytosol	49.44	28.03
CDY44261	Canola	cytosol	55.06	27.68
OQU85305	Sorghum	cytosol	49.44	27.5
TraesCS6A01G231200.1	Wheat	cytosol	47.19	26.09
TraesCS6D01G203900.1	Wheat	cytosol	47.19	26.09
CDX88047	Canola	vacuole	57.3	24.76
CDY64632	Canola	extracellular	59.55	23.04
GSMUA_Achr3P13330_001	Banana	plastid	52.81	22.38
HORVU6Hr1G056610.3	Barley	mitochondrion	44.94	21.74
CDX96205	Canola	cytosol	29.21	17.81
CDX91453	Canola	cytosol	43.82	16.05
CDX80385	Canola	cytosol	56.18	12.89
CDX87000	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.40.50.1000	MapMan:35.2	GO:A0A078DF51	EnsemblPlants:CDX86999	ProteinID:CDX86999	ProteinID:CDX86999.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00145855001	PFAM:PF16205	PANTHER:PTHR10744	PANTHER:PTHR10744:SF17
InterPro:Ribosomal_S11_N	InterPro:Ribosomal_S17/S11	UniParc:UPI0004EE373F	SEG:seg	:	:

Description

BnaC03g52690D

Coordinates

chrLK031848:+:1465480..1466048

Molecular Weight (calculated)

9854.2 Da

IEP (calculated)

11.648

GRAVY (calculated)

-0.576

Length

89 amino acids

Sequence
(BLAST)

1: MRCINKPSLP VHRPLSTFGN KTAVMAEQTE KAFLKQPKVF LSSKKSGKGK RPGKGGTRFW KNIGLGFKTP REAILDPFPI KSSALLNNQ

Best Arabidopsis Sequence Match ( AT3G48930.1 )
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYVDKKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRD YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHIIIGQCR PLSKTVRFNV LKVIPAGSSS SFGKKAFTGM

Arabidopsis Description

RPS11A40S ribosomal protein S11-1 [Source:UniProtKB/Swiss-Prot;Acc:P16181]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.