CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87000	Canola	cytosol	32.19	92.16
CDY16867	Canola	cytosol	86.99	79.87
CDY46968	Canola	cytosol	86.3	79.25
PGSC0003DMT400015122	Potato	mitochondrion	54.11	78.22
CDY69343	Canola	cytosol	84.93	77.99
CDX83060	Canola	cytosol	84.93	77.99
CDX87158	Canola	cytosol	84.93	77.99
KRH75732	Soybean	cytosol, plastid	62.33	77.12
AT5G23740.1	Thale cress	cytosol	83.56	76.73
CDY64707	Canola	cytosol	82.88	76.1
CDY05882	Canola	cytosol	82.88	76.1
KRH37857	Soybean	cytosol	77.4	71.07
Os04t0502300-01	Rice	cytosol, plasma membrane, plastid	77.4	70.62
VIT_11s0118g00680.t01	Wine grape	cytosol	77.4	70.62
EES12457	Sorghum	cytosol	77.4	70.62
OQU85305	Sorghum	cytosol	77.4	70.62
CDY44261	Canola	cytosol	85.62	70.62
Zm00001d003118_P001	Maize	cytosol	74.66	69.43
VIT_04s0008g06220.t01	Wine grape	cytosol	76.03	69.38
KRH20240	Soybean	nucleus	75.34	69.18
KRH03569	Soybean	cytosol, nucleus	75.34	69.18
Solyc06g073790.2.1	Tomato	cytosol	73.97	67.92
Solyc06g073800.2.1	Tomato	cytosol, nucleus	73.97	67.92
Solyc12g042080.1.1	Tomato	nucleus	73.97	67.92
PGSC0003DMT400015118	Potato	cytosol	71.23	66.67
TraesCS6A01G231200.1	Wheat	cytosol	73.29	66.46
TraesCS6D01G203900.1	Wheat	cytosol	73.29	66.46
PGSC0003DMT400013305	Potato	cytosol	71.23	65.41
KRH37858	Soybean	endoplasmic reticulum, extracellular	76.03	62.71
CDX88047	Canola	vacuole	85.62	60.68
PGSC0003DMT400015117	Potato	cytosol	71.23	58.1
HORVU6Hr1G056610.3	Barley	mitochondrion	72.6	57.61
CDY64632	Canola	extracellular	84.25	53.48
CDX91453	Canola	cytosol	68.49	41.15
CDX80385	Canola	cytosol	85.62	32.22
CDX86999	Canola	mitochondrion	17.81	29.21

Protein Annotations

MapMan:17.1.3.1.12	Gene3D:2.40.50.1000	GO:A0A078E2R1	EnsemblPlants:CDX96205	ProteinID:CDX96205	ProteinID:CDX96205.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00102295001	InterPro:NA-bd_OB-fold	PFAM:PD001295	PFAM:PF00366
PFAM:PF16205	PRINTS:PR00973	ScanProsite:PS00056	PANTHER:PTHR10744	PANTHER:PTHR10744:SF17	InterPro:Ribosomal_S11_N
InterPro:Ribosomal_S17/S11	InterPro:Ribosomal_S17_CS	InterPro:Ribosomal_S17_arc-typ	SUPFAM:SSF50249	TIGRFAMs:TIGR03630	UniParc:UPI0004EED215

Description

BnaC02g14460D

Coordinates

chrLK031893:-:613218..613845

Molecular Weight (calculated)

16722.7 Da

IEP (calculated)

11.748

GRAVY (calculated)

-0.306

Length

146 amino acids

Sequence
(BLAST)

001: MFDRSLLKRP RKGGNRFWKN IGLGFKTPRD AIEGLAYFFV NRGLQCPFTG TVSVRGRILA GTCHSAKMQR TIIFRRNYFH FVKKYQRYEK RHSNIPAHVS
101: PCFRVKEGDH VIIGQCRPLS KTVRFNVLKV IPAGASAFAK KAFTGM

Best Arabidopsis Sequence Match ( AT3G48930.1 )
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYVDKKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRD YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHIIIGQCR PLSKTVRFNV LKVIPAGSSS SFGKKAFTGM

Arabidopsis Description

RPS11A40S ribosomal protein S11-1 [Source:UniProtKB/Swiss-Prot;Acc:P16181]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.