Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87000 | Canola | cytosol | 18.93 | 90.2 |
| CDY69343 | Canola | cytosol | 51.44 | 78.62 |
| CDY46968 | Canola | cytosol | 51.44 | 78.62 |
| CDX87158 | Canola | cytosol | 51.44 | 78.62 |
| AT5G23740.1 | Thale cress | cytosol | 50.62 | 77.36 |
| CDY64707 | Canola | cytosol | 50.62 | 77.36 |
| CDY16867 | Canola | cytosol | 50.62 | 77.36 |
| CDY05882 | Canola | cytosol | 50.62 | 77.36 |
| CDX83060 | Canola | cytosol | 50.62 | 77.36 |
| PGSC0003DMT400015122 | Potato | mitochondrion | 31.69 | 76.24 |
| KRH37857 | Soybean | cytosol | 45.68 | 69.81 |
| KRH03569 | Soybean | cytosol, nucleus | 45.68 | 69.81 |
| EES12457 | Sorghum | cytosol | 45.68 | 69.38 |
| KRH20240 | Soybean | nucleus | 45.27 | 69.18 |
| VIT_11s0118g00680.t01 | Wine grape | cytosol | 45.27 | 68.75 |
| PGSC0003DMT400015118 | Potato | cytosol | 44.03 | 68.59 |
| Solyc06g073800.2.1 | Tomato | cytosol, nucleus | 44.86 | 68.55 |
| Solyc12g042080.1.1 | Tomato | nucleus | 44.86 | 68.55 |
| Solyc06g073790.2.1 | Tomato | cytosol | 44.86 | 68.55 |
| CDX96205 | Canola | cytosol | 41.15 | 68.49 |
| CDY44261 | Canola | cytosol | 49.79 | 68.36 |
| OQU85305 | Sorghum | cytosol | 44.86 | 68.12 |
| Os04t0502300-01 | Rice | cytosol, plasma membrane, plastid | 44.86 | 68.12 |
| VIT_04s0008g06220.t01 | Wine grape | cytosol | 44.86 | 68.12 |
| PGSC0003DMT400013305 | Potato | cytosol | 44.03 | 67.3 |
| KRH75732 | Soybean | cytosol, plastid | 32.51 | 66.95 |
| Zm00001d003118_P001 | Maize | cytosol | 43.21 | 66.88 |
| TraesCS6D01G203900.1 | Wheat | cytosol | 43.62 | 65.84 |
| TraesCS6A01G231200.1 | Wheat | cytosol | 43.21 | 65.22 |
| CDX88047 | Canola | vacuole | 53.5 | 63.11 |
| KRH37858 | Soybean | endoplasmic reticulum, extracellular | 44.86 | 61.58 |
| HORVU6Hr1G056610.3 | Barley | mitochondrion | 43.21 | 57.07 |
| CDY64632 | Canola | extracellular | 53.91 | 56.96 |
| PGSC0003DMT400015117 | Potato | cytosol | 41.56 | 56.42 |
| CDX86999 | Canola | mitochondrion | 16.05 | 43.82 |
| CDX80385 | Canola | cytosol | 54.32 | 34.02 |
Protein Annotations
| MapMan:17.1.3.1.12 | Gene3D:2.40.50.1000 | GO:A0A078DW52 | EnsemblPlants:CDX91453 | ProteinID:CDX91453 | ProteinID:CDX91453.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00152786001 | InterPro:NA-bd_OB-fold | PFAM:PD001295 | PFAM:PF00366 |
| PRINTS:PR00973 | ScanProsite:PS00056 | PANTHER:PTHR10744 | PANTHER:PTHR10744:SF17 | InterPro:Ribosomal_S17/S11 | InterPro:Ribosomal_S17_CS |
| SUPFAM:SSF50249 | UniParc:UPI0004EF4958 | SEG:seg | : | : | : |
Description
BnaC04g06970D
Coordinates
chrLK031867:+:1100350..1102094
Molecular Weight (calculated)
27468.7 Da
IEP (calculated)
10.554
GRAVY (calculated)
-0.242
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MANSKVLLSD LMSCRCFSTA EVRLRPGMSS DIRSGEQEQP VGMAEQTEKA FLKQPNVFLS SKKSGKGKRP GKGGNRFWKN IGRILAGTCH SAKMQRTIIV
101: PQNYLHFVKK YQRYEKRHSN ISAHVSPCFR VKEGDHVIIG QCRPLSKTVR FNVLKVIPAG ASAFAKKAFT GIVSMFQNVL FVNPFCLALL LNIFIHGCWL
201: TLFPGFWQAE EVTQALMKPL RQLKHDQSCK KEEQYSNVPI FSE
101: PQNYLHFVKK YQRYEKRHSN ISAHVSPCFR VKEGDHVIIG QCRPLSKTVR FNVLKVIPAG ASAFAKKAFT GIVSMFQNVL FVNPFCLALL LNIFIHGCWL
201: TLFPGFWQAE EVTQALMKPL RQLKHDQSCK KEEQYSNVPI FSE
001: MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYVDKKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRD YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHIIIGQCR PLSKTVRFNV LKVIPAGSSS SFGKKAFTGM
101: YEKRHSNIPA HVSPCFRVKE GDHIIIGQCR PLSKTVRFNV LKVIPAGSSS SFGKKAFTGM
Arabidopsis Description
RPS11A40S ribosomal protein S11-1 [Source:UniProtKB/Swiss-Prot;Acc:P16181]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.