Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0008g06220.t01 | Wine grape | cytosol | 96.88 | 96.88 |
| KRH37857 | Soybean | cytosol | 93.12 | 93.71 |
| GSMUA_Achr6P35270_001 | Banana | cytosol | 91.88 | 92.45 |
| GSMUA_Achr7P20890_001 | Banana | cytosol | 71.88 | 92.0 |
| KRH03569 | Soybean | cytosol, nucleus | 90.62 | 91.19 |
| KRH20240 | Soybean | nucleus | 90.0 | 90.57 |
| Solyc12g042080.1.1 | Tomato | nucleus | 90.0 | 90.57 |
| Solyc06g073800.2.1 | Tomato | cytosol, nucleus | 89.38 | 89.94 |
| Solyc06g073790.2.1 | Tomato | cytosol | 89.38 | 89.94 |
| PGSC0003DMT400015118 | Potato | cytosol | 87.5 | 89.74 |
| GSMUA_Achr6P22460_001 | Banana | cytosol | 89.38 | 89.38 |
| EES12457 | Sorghum | cytosol | 88.12 | 88.12 |
| Bra009706.1-P | Field mustard | cytosol | 87.5 | 88.05 |
| PGSC0003DMT400013305 | Potato | cytosol | 87.5 | 88.05 |
| CDY69343 | Canola | cytosol | 86.88 | 87.42 |
| CDY16867 | Canola | cytosol | 86.88 | 87.42 |
| CDY46968 | Canola | cytosol | 86.88 | 87.42 |
| CDX87158 | Canola | cytosol | 86.88 | 87.42 |
| Bra029381.1-P | Field mustard | cytosol | 86.88 | 87.42 |
| Bra026484.1-P | Field mustard | cytosol | 86.88 | 87.42 |
| AT5G23740.1 | Thale cress | cytosol | 86.88 | 87.42 |
| Os04t0502300-01 | Rice | cytosol, plasma membrane, plastid | 86.88 | 86.88 |
| OQU85305 | Sorghum | cytosol | 86.88 | 86.88 |
| AT3G48930.1 | Thale cress | cytosol | 86.88 | 86.88 |
| CDX83060 | Canola | cytosol | 86.25 | 86.79 |
| Bra029928.1-P | Field mustard | cytosol | 86.25 | 86.79 |
| AT4G30800.1 | Thale cress | cytosol | 86.25 | 86.79 |
| KRH75732 | Soybean | cytosol, plastid | 63.12 | 85.59 |
| CDY05882 | Canola | cytosol | 85.0 | 85.53 |
| CDY64707 | Canola | cytosol | 85.0 | 85.53 |
| Zm00001d003118_P001 | Maize | cytosol | 83.75 | 85.35 |
| PGSC0003DMT400015122 | Potato | mitochondrion | 53.75 | 85.15 |
| TraesCS6D01G203900.1 | Wheat | cytosol | 85.62 | 85.09 |
| GSMUA_Achr4P20370_001 | Banana | cytosol | 60.62 | 84.35 |
| TraesCS6A01G231200.1 | Wheat | cytosol | 84.38 | 83.85 |
| KRH37858 | Soybean | endoplasmic reticulum, extracellular | 90.0 | 81.36 |
| CDX96205 | Canola | cytosol | 70.62 | 77.4 |
| CDY44261 | Canola | cytosol | 85.0 | 76.84 |
| PGSC0003DMT400015117 | Potato | cytosol | 85.0 | 75.98 |
| HORVU6Hr1G056610.3 | Barley | mitochondrion | 83.75 | 72.83 |
| GSMUA_Achr9P09150_001 | Banana | cytosol | 60.0 | 69.06 |
| CDX88047 | Canola | vacuole | 87.5 | 67.96 |
| CDY64632 | Canola | extracellular | 85.62 | 59.57 |
| GSMUA_Achr3P13330_001 | Banana | plastid | 60.62 | 46.19 |
| CDX91453 | Canola | cytosol | 68.75 | 45.27 |
| Bra018026.1-P | Field mustard | cytosol | 76.88 | 43.93 |
| CDX80385 | Canola | cytosol | 87.5 | 36.08 |
Protein Annotations
| EntrezGene:100265421 | wikigene:100265421 | MapMan:17.1.3.1.12 | Gene3D:2.40.50.1000 | ProteinID:CBI25585 | ProteinID:CBI25585.3 |
| UniProt:D7T503 | EMBL:FN595515 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022627 |
| GO:GO:0030529 | EntrezGene:LOC100265421 | wikigene:LOC100265421 | InterPro:NA-bd_OB-fold | PFAM:PD001295 | PFAM:PF00366 |
| PFAM:PF16205 | PRINTS:PR00973 | ScanProsite:PS00056 | PANTHER:PTHR10744 | PANTHER:PTHR10744:SF17 | InterPro:Ribosomal_S11_N |
| InterPro:Ribosomal_S17/S11 | InterPro:Ribosomal_S17_CS | InterPro:Ribosomal_S17_arc-typ | SUPFAM:SSF50249 | TIGR:TC55502 | TIGRFAMs:TIGR03630 |
| UniParc:UPI0001985949 | ArrayExpress:VIT_11s0118g00680 | EnsemblPlantsGene:VIT_11s0118g00680 | EnsemblPlants:VIT_11s0118g00680.t01 | unigene:Vvi.11344 | RefSeq:XP_002267523 |
| RefSeq:XP_002267523.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr11:+:6454576..6464281
Molecular Weight (calculated)
17875.1 Da
IEP (calculated)
11.178
GRAVY (calculated)
-0.500
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQTEKAFL KQPKVFLCSK KSAKGKRPGK GGNRFWKSIG LGFKTPRDAI EGTYIDKKCP FTGTVSIRGR ILAGTCHSAK MMRTIIVRRN YLHYVKKYQR
101: YEKRHSNIPA HTSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGSSG GGGKKAFTAM
101: YEKRHSNIPA HTSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGSSG GGGKKAFTAM
001: MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYVDKKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRD YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHIIIGQCR PLSKTVRFNV LKVIPAGSSS SFGKKAFTGM
101: YEKRHSNIPA HVSPCFRVKE GDHIIIGQCR PLSKTVRFNV LKVIPAGSSS SFGKKAFTGM
Arabidopsis Description
RPS11A40S ribosomal protein S11-1 [Source:UniProtKB/Swiss-Prot;Acc:P16181]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.