Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P13340_001 | Banana | cytosol | 38.85 | 80.6 |
| GSMUA_Achr4P20380_001 | Banana | cytosol | 38.13 | 79.1 |
| PGSC0003DMT400015122 | Potato | mitochondrion | 55.4 | 76.24 |
| KRH75732 | Soybean | cytosol, plastid | 56.12 | 66.1 |
| GSMUA_Achr6P35270_001 | Banana | cytosol | 71.94 | 62.89 |
| GSMUA_Achr6P22460_001 | Banana | cytosol | 70.5 | 61.25 |
| VIT_04s0008g06220.t01 | Wine grape | cytosol | 69.78 | 60.62 |
| KRH20240 | Soybean | nucleus | 69.06 | 60.38 |
| KRH03569 | Soybean | cytosol, nucleus | 69.06 | 60.38 |
| VIT_11s0118g00680.t01 | Wine grape | cytosol | 69.06 | 60.0 |
| Solyc12g042080.1.1 | Tomato | nucleus | 68.35 | 59.75 |
| Solyc06g073790.2.1 | Tomato | cytosol | 67.63 | 59.12 |
| Solyc06g073800.2.1 | Tomato | cytosol, nucleus | 67.63 | 59.12 |
| KRH37857 | Soybean | cytosol | 67.63 | 59.12 |
| PGSC0003DMT400015118 | Potato | cytosol | 66.19 | 58.97 |
| PGSC0003DMT400013305 | Potato | cytosol | 66.91 | 58.49 |
| EES12457 | Sorghum | cytosol | 66.91 | 58.12 |
| TraesCS6D01G203900.1 | Wheat | cytosol | 66.19 | 57.14 |
| Os04t0502300-01 | Rice | cytosol, plasma membrane, plastid | 65.47 | 56.88 |
| OQU85305 | Sorghum | cytosol | 65.47 | 56.88 |
| AT5G23740.1 | Thale cress | cytosol | 64.75 | 56.6 |
| TraesCS6A01G231200.1 | Wheat | cytosol | 65.47 | 56.52 |
| Zm00001d003118_P001 | Maize | cytosol | 63.31 | 56.05 |
| Bra029928.1-P | Field mustard | cytosol | 64.03 | 55.97 |
| Bra026484.1-P | Field mustard | cytosol | 64.03 | 55.97 |
| Bra029381.1-P | Field mustard | cytosol | 63.31 | 55.35 |
| Bra009706.1-P | Field mustard | cytosol | 63.31 | 55.35 |
| GSMUA_Achr7P20890_001 | Banana | cytosol | 49.64 | 55.2 |
| AT3G48930.1 | Thale cress | cytosol | 62.59 | 54.38 |
| AT4G30800.1 | Thale cress | cytosol | 61.15 | 53.46 |
| KRH37858 | Soybean | endoplasmic reticulum, extracellular | 67.63 | 53.11 |
| HORVU6Hr1G056610.3 | Barley | mitochondrion | 66.91 | 50.54 |
| PGSC0003DMT400015117 | Potato | cytosol | 64.75 | 50.28 |
| GSMUA_Achr4P20370_001 | Banana | cytosol | 35.97 | 43.48 |
| Bra018026.1-P | Field mustard | cytosol | 58.99 | 29.29 |
| GSMUA_Achr3P13330_001 | Banana | plastid | 38.85 | 25.71 |
Protein Annotations
| MapMan:17.1.3.1.12 | Gene3D:2.40.50.1000 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr9G09150_001 | EnsemblPlants:GSMUA_Achr9P09150_001 |
| EnsemblPlants:GSMUA_Achr9T09150_001 | UniProt:M0TYS4 | InterPro:NA-bd_OB-fold | PFAM:PD001295 | PFAM:PF00366 | PANTHER:PTHR10744 |
| PANTHER:PTHR10744:SF18 | InterPro:Ribosomal_S17/S11 | SUPFAM:SSF50249 | UniParc:UPI000296A435 | : | : |
Description
40S ribosomal protein S11 [Source:GMGC_GENE;Acc:GSMUA_Achr9G09150_001]
Coordinates
chr9:+:5928187..5930478
Molecular Weight (calculated)
15637.5 Da
IEP (calculated)
11.287
GRAVY (calculated)
-0.253
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTEKLFLKQ PKDSRHPEKP LKVLTLIRNA HSRNVSIRGC ILAGTCHSAK MNRTIIIRRN YLHYVKKYQR QAILVGSLYE KRHSNIPAHI SPCFRVKEGD
101: HVIIGQCRLL AKTVRFNVLK VIPAGTTSGG SSKKAIAAV
101: HVIIGQCRLL AKTVRFNVLK VIPAGTTSGG SSKKAIAAV
001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV
Arabidopsis Description
RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.