Factsheet for GSMUA_Achr4P20370_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P35270_001	Banana	cytosol	86.09	62.26
GSMUA_Achr6P22460_001	Banana	cytosol	85.22	61.25
KRH03569	Soybean	cytosol, nucleus	84.35	61.01
VIT_11s0118g00680.t01	Wine grape	cytosol	84.35	60.62
VIT_04s0008g06220.t01	Wine grape	cytosol	84.35	60.62
KRH37857	Soybean	cytosol	83.48	60.38
KRH20240	Soybean	nucleus	83.48	60.38
Solyc12g042080.1.1	Tomato	nucleus	82.61	59.75
Solyc06g073800.2.1	Tomato	cytosol, nucleus	82.61	59.75
Solyc06g073790.2.1	Tomato	cytosol	82.61	59.75
PGSC0003DMT400015118	Potato	cytosol	80.0	58.97
AT5G23740.1	Thale cress	cytosol	80.0	57.86
EES12457	Sorghum	cytosol	80.0	57.5
AT4G30800.1	Thale cress	cytosol	79.13	57.23
PGSC0003DMT400013305	Potato	cytosol	79.13	57.23
Bra009706.1-P	Field mustard	cytosol	79.13	57.23
Bra029928.1-P	Field mustard	cytosol	79.13	57.23
AT3G48930.1	Thale cress	cytosol	79.13	56.88
Os04t0502300-01	Rice	cytosol, plasma membrane, plastid	79.13	56.88
Bra026484.1-P	Field mustard	cytosol	78.26	56.6
Bra029381.1-P	Field mustard	cytosol	78.26	56.6
TraesCS6D01G203900.1	Wheat	cytosol	79.13	56.52
OQU85305	Sorghum	cytosol	78.26	56.25
Zm00001d003118_P001	Maize	cytosol	75.65	55.41
TraesCS6A01G231200.1	Wheat	cytosol	77.39	55.28
CDX86999	Canola	mitochondrion	41.74	53.93
GSMUA_Achr7P20890_001	Banana	cytosol	57.39	52.8
KRH37858	Soybean	endoplasmic reticulum, extracellular	80.87	52.54
GSMUA_Achr3P13330_001	Banana	plastid	89.57	49.05
PGSC0003DMT400015117	Potato	cytosol	75.65	48.6
HORVU6Hr1G056610.3	Barley	mitochondrion	76.52	47.83
KRH75732	Soybean	cytosol, plastid	45.22	44.07
CDX87000	Canola	cytosol	16.52	37.25
GSMUA_Achr9P09150_001	Banana	cytosol	43.48	35.97
PGSC0003DMT400015122	Potato	mitochondrion	30.43	34.65
Bra018026.1-P	Field mustard	cytosol	66.96	27.5
GSMUA_Achr3P13340_001	Banana	cytosol	3.48	5.97
GSMUA_Achr4P20380_001	Banana	cytosol	2.61	4.48

Protein Annotations

MapMan:17.1.3.1.12	Gene3D:2.40.50.1000	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G20370_001	EnsemblPlants:GSMUA_Achr4P20370_001
EnsemblPlants:GSMUA_Achr4T20370_001	UniProt:M0SQK0	InterPro:NA-bd_OB-fold	PFAM:PD001295	PFAM:PF16205	PANTHER:PTHR10744
PANTHER:PTHR10744:SF17	InterPro:Ribosomal_S11_N	InterPro:Ribosomal_S17/S11	SUPFAM:SSF50249	UniParc:UPI000294D87E	SEG:seg

Description

40S ribosomal protein S11 [Source:GMGC_GENE;Acc:GSMUA_Achr4G20370_001]

Coordinates

chr4:+:21012147..21013351

Molecular Weight (calculated)

13081.1 Da

IEP (calculated)

11.101

GRAVY (calculated)

-0.583

Length

115 amino acids

Sequence
(BLAST)

001: MAEQTEKAFL KQPKVFLCSK KSGKGKRPGK GGNRFWKSIG LGFKTPREAI EGTYIDKKCP FTGNVSIRGR ILAGTCHSAK MNRTIIVRRN YLHYVKKYQR
101: QARNCHTALI SNCLF

Best Arabidopsis Sequence Match ( AT5G23740.1 )
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV

Arabidopsis Description

RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.