Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015118 | Potato | cytosol | 83.8 | 96.15 |
| PGSC0003DMT400013305 | Potato | cytosol | 82.68 | 93.08 |
| KRH03569 | Soybean | cytosol, nucleus | 77.09 | 86.79 |
| KRH20240 | Soybean | nucleus | 76.54 | 86.16 |
| PGSC0003DMT400015122 | Potato | mitochondrion | 48.6 | 86.14 |
| VIT_04s0008g06220.t01 | Wine grape | cytosol | 76.54 | 85.62 |
| GSMUA_Achr6P35270_001 | Banana | cytosol | 75.98 | 85.53 |
| VIT_11s0118g00680.t01 | Wine grape | cytosol | 75.98 | 85.0 |
| KRH37857 | Soybean | cytosol | 74.86 | 84.28 |
| KRH75732 | Soybean | cytosol, plastid | 55.31 | 83.9 |
| GSMUA_Achr7P20890_001 | Banana | cytosol | 58.1 | 83.2 |
| GSMUA_Achr6P22460_001 | Banana | cytosol | 73.74 | 82.5 |
| AT4G30800.1 | Thale cress | cytosol | 72.63 | 81.76 |
| CDX83060 | Canola | cytosol | 71.51 | 80.5 |
| Bra029928.1-P | Field mustard | cytosol | 71.51 | 80.5 |
| AT5G23740.1 | Thale cress | cytosol | 71.51 | 80.5 |
| CDY64707 | Canola | cytosol | 71.51 | 80.5 |
| Os04t0502300-01 | Rice | cytosol, plasma membrane, plastid | 71.51 | 80.0 |
| AT3G48930.1 | Thale cress | cytosol | 71.51 | 80.0 |
| EES12457 | Sorghum | cytosol | 71.51 | 80.0 |
| CDY05882 | Canola | cytosol | 70.95 | 79.87 |
| Bra009706.1-P | Field mustard | cytosol | 70.95 | 79.87 |
| Zm00001d003118_P001 | Maize | cytosol | 69.83 | 79.62 |
| OQU85305 | Sorghum | cytosol | 70.95 | 79.38 |
| CDY69343 | Canola | cytosol | 70.39 | 79.25 |
| Bra029381.1-P | Field mustard | cytosol | 70.39 | 79.25 |
| CDX87158 | Canola | cytosol | 70.39 | 79.25 |
| CDY46968 | Canola | cytosol | 70.39 | 79.25 |
| Bra026484.1-P | Field mustard | cytosol | 70.39 | 79.25 |
| CDY16867 | Canola | cytosol | 70.39 | 79.25 |
| TraesCS6D01G203900.1 | Wheat | cytosol | 70.95 | 78.88 |
| TraesCS6A01G231200.1 | Wheat | cytosol | 69.83 | 77.64 |
| KRH37858 | Soybean | endoplasmic reticulum, extracellular | 74.86 | 75.71 |
| GSMUA_Achr4P20370_001 | Banana | cytosol | 48.6 | 75.65 |
| CDY44261 | Canola | cytosol | 70.95 | 71.75 |
| CDX96205 | Canola | cytosol | 58.1 | 71.23 |
| HORVU6Hr1G056610.3 | Barley | mitochondrion | 70.95 | 69.02 |
| GSMUA_Achr9P09150_001 | Banana | cytosol | 50.28 | 64.75 |
| CDX88047 | Canola | vacuole | 70.95 | 61.65 |
| CDY64632 | Canola | extracellular | 72.07 | 56.09 |
| GSMUA_Achr3P13330_001 | Banana | plastid | 51.96 | 44.29 |
| Bra018026.1-P | Field mustard | cytosol | 67.6 | 43.21 |
| CDX91453 | Canola | cytosol | 56.42 | 41.56 |
| CDX80385 | Canola | cytosol | 71.51 | 32.99 |
Protein Annotations
| EntrezGene:102584890 | EntrezGene:102593567 | EntrezGene:102593885 | MapMan:17.1.3.1.12 | Gene3D:2.40.50.1000 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0030529 | UniProt:M1A5H7 | InterPro:NA-bd_OB-fold | PFAM:PD001295 | PFAM:PF00366 |
| PFAM:PF16205 | EnsemblPlantsGene:PGSC0003DMG401005911 | PGSC:PGSC0003DMG401005911 | EnsemblPlants:PGSC0003DMT400015117 | PRINTS:PR00973 | ScanProsite:PS00056 |
| PANTHER:PTHR10744 | PANTHER:PTHR10744:SF17 | InterPro:Ribosomal_S11_N | InterPro:Ribosomal_S17/S11 | InterPro:Ribosomal_S17_CS | SUPFAM:SSF50249 |
| UniParc:UPI0002949BD5 | SEG:seg | : | : | : | : |
Description
40S ribosomal protein S11 [Source:PGSC_GENE;Acc:PGSC0003DMG401005911]
Coordinates
chr6:-:54394802..54396947
Molecular Weight (calculated)
19523.1 Da
IEP (calculated)
11.263
GRAVY (calculated)
-0.304
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFARVFALD KLPSLSSASL VILSHGGAEK AFLKQPGVFL SSKKTGKGKR PGKGGNRYFK SIGLGFKTPR EATEGTYIDK KCPFTGNVSI RGRILAGTCH
101: SAKMNRTIIV RRNYLHYVKK YEKRHSNIPA HISPCFRVKE GDHVTIGQCR PLSKTVRFNV LKVIPAGSGG GGKKAFTGM
101: SAKMNRTIIV RRNYLHYVKK YEKRHSNIPA HISPCFRVKE GDHVTIGQCR PLSKTVRFNV LKVIPAGSGG GGKKAFTGM
001: MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPREAI EGTYIDQKCP FTGTVSIRGR ILSGTCHSAK MQRTIIVRRD YLHFVKKYRR
101: YEKRHSNIPA HVSPCFRVKE GDRVTIGQCR PLSKTVRFNV LKVIPAGSSS IGKKAFTGM
101: YEKRHSNIPA HVSPCFRVKE GDRVTIGQCR PLSKTVRFNV LKVIPAGSSS IGKKAFTGM
Arabidopsis Description
RPS11B40S ribosomal protein S11-2 [Source:UniProtKB/Swiss-Prot;Acc:O65569]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.