Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69343 | Canola | cytosol | 94.97 | 94.97 |
| Bra009706.1-P | Field mustard | cytosol | 94.97 | 94.97 |
| Bra026484.1-P | Field mustard | cytosol | 94.97 | 94.97 |
| Bra029381.1-P | Field mustard | cytosol | 94.97 | 94.97 |
| CDX87158 | Canola | cytosol | 94.97 | 94.97 |
| CDY46968 | Canola | cytosol | 94.97 | 94.97 |
| CDY16867 | Canola | cytosol | 94.34 | 94.34 |
| AT3G48930.1 | Thale cress | cytosol | 94.34 | 93.75 |
| AT4G30800.1 | Thale cress | cytosol | 91.82 | 91.82 |
| EES12457 | Sorghum | cytosol | 88.05 | 87.5 |
| KRH03569 | Soybean | cytosol, nucleus | 87.42 | 87.42 |
| VIT_11s0118g00680.t01 | Wine grape | cytosol | 87.42 | 86.88 |
| Os04t0502300-01 | Rice | cytosol, plasma membrane, plastid | 87.42 | 86.88 |
| KRH20240 | Soybean | nucleus | 86.79 | 86.79 |
| OQU85305 | Sorghum | cytosol | 86.79 | 86.25 |
| KRH37857 | Soybean | cytosol | 86.16 | 86.16 |
| VIT_04s0008g06220.t01 | Wine grape | cytosol | 86.16 | 85.62 |
| Solyc12g042080.1.1 | Tomato | nucleus | 85.53 | 85.53 |
| Solyc06g073800.2.1 | Tomato | cytosol, nucleus | 85.53 | 85.53 |
| Solyc06g073790.2.1 | Tomato | cytosol | 85.53 | 85.53 |
| Zm00001d003118_P001 | Maize | cytosol | 84.28 | 85.35 |
| PGSC0003DMT400015118 | Potato | cytosol | 83.65 | 85.26 |
| GSMUA_Achr6P35270_001 | Banana | cytosol | 84.91 | 84.91 |
| GSMUA_Achr7P20890_001 | Banana | cytosol | 66.04 | 84.0 |
| CDY44261 | Canola | cytosol | 93.08 | 83.62 |
| CDX96205 | Canola | cytosol | 76.73 | 83.56 |
| TraesCS6D01G203900.1 | Wheat | cytosol | 84.28 | 83.23 |
| PGSC0003DMT400013305 | Potato | cytosol | 83.02 | 83.02 |
| GSMUA_Achr6P22460_001 | Banana | cytosol | 83.02 | 82.5 |
| KRH75732 | Soybean | cytosol, plastid | 61.01 | 82.2 |
| TraesCS6A01G231200.1 | Wheat | cytosol | 83.02 | 81.99 |
| PGSC0003DMT400015122 | Potato | mitochondrion | 50.94 | 80.2 |
| GSMUA_Achr4P20370_001 | Banana | cytosol | 57.86 | 80.0 |
| KRH37858 | Soybean | endoplasmic reticulum, extracellular | 83.65 | 75.14 |
| CDX88047 | Canola | vacuole | 94.97 | 73.3 |
| HORVU6Hr1G056610.3 | Barley | mitochondrion | 83.02 | 71.74 |
| PGSC0003DMT400015117 | Potato | cytosol | 80.5 | 71.51 |
| GSMUA_Achr9P09150_001 | Banana | cytosol | 56.6 | 64.75 |
| CDX91453 | Canola | cytosol | 77.36 | 50.62 |
| GSMUA_Achr3P13330_001 | Banana | plastid | 57.86 | 43.81 |
| CDX80385 | Canola | cytosol | 94.97 | 38.92 |
Protein Annotations
| MapMan:17.1.3.1.12 | Gene3D:2.40.50.1000 | EntrezGene:832439 | UniProt:A0A178UPD3 | ProteinID:AED93206.1 | EMBL:AF360280 |
| ArrayExpress:AT5G23740 | EnsemblPlantsGene:AT5G23740 | RefSeq:AT5G23740 | TAIR:AT5G23740 | RefSeq:AT5G23740-TAIR-G | EnsemblPlants:AT5G23740.1 |
| TAIR:AT5G23740.1 | EMBL:AY062955 | EMBL:AY087240 | Unigene:At.20778 | ProteinID:BAB10047.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0019538 |
| GO:GO:0019843 | GO:GO:0022627 | GO:GO:0030529 | EMBL:L07877 | InterPro:NA-bd_OB-fold | RefSeq:NP_197763.1 |
| ProteinID:OAO95493.1 | UniProt:P42733 | PFAM:PD001295 | PFAM:PF00366 | PFAM:PF16205 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00973 |
| ScanProsite:PS00056 | PANTHER:PTHR10744 | PANTHER:PTHR10744:SF17 | Symbol:RPS11-BETA | InterPro:Ribosomal_S11_N | InterPro:Ribosomal_S17/S11 |
| InterPro:Ribosomal_S17_CS | InterPro:Ribosomal_S17_arc-typ | SUPFAM:SSF50249 | TIGRFAMs:TIGR03630 | UniParc:UPI0000132EC5 | SEG:seg |
Description
RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
Coordinates
chr5:-:8007921..8009436
Molecular Weight (calculated)
17749.9 Da
IEP (calculated)
11.304
GRAVY (calculated)
-0.391
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.