Factsheet for Solyc12g042080.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g073790.2.1	Tomato	cytosol	99.37	99.37
Solyc06g073800.2.1	Tomato	cytosol, nucleus	99.37	99.37
PGSC0003DMT400013305	Potato	cytosol	97.48	97.48
KRH03569	Soybean	cytosol, nucleus	91.82	91.82
KRH20240	Soybean	nucleus	91.19	91.19
VIT_04s0008g06220.t01	Wine grape	cytosol	91.19	90.62
GSMUA_Achr6P35270_001	Banana	cytosol	90.57	90.57
VIT_11s0118g00680.t01	Wine grape	cytosol	90.57	90.0
KRH37857	Soybean	cytosol	89.31	89.31
GSMUA_Achr6P22460_001	Banana	cytosol	88.05	87.5
KRH75732	Soybean	cytosol, plastid	64.78	87.29
GSMUA_Achr7P20890_001	Banana	cytosol	68.55	87.2
AT4G30800.1	Thale cress	cytosol	86.16	86.16
AT5G23740.1	Thale cress	cytosol	85.53	85.53
Bra029928.1-P	Field mustard	cytosol	85.53	85.53
CDX83060	Canola	cytosol	85.53	85.53
CDY64707	Canola	cytosol	85.53	85.53
AT3G48930.1	Thale cress	cytosol	85.53	85.0
Os04t0502300-01	Rice	cytosol, plasma membrane, plastid	85.53	85.0
EES12457	Sorghum	cytosol	85.53	85.0
CDY05882	Canola	cytosol	84.91	84.91
Bra009706.1-P	Field mustard	cytosol	84.91	84.91
CDY69343	Canola	cytosol	84.28	84.28
CDY46968	Canola	cytosol	84.28	84.28
Bra029381.1-P	Field mustard	cytosol	84.28	84.28
Bra026484.1-P	Field mustard	cytosol	84.28	84.28
CDX87158	Canola	cytosol	84.28	84.28
CDY16867	Canola	cytosol	84.28	84.28
TraesCS6D01G203900.1	Wheat	cytosol	84.91	83.85
OQU85305	Sorghum	cytosol	84.28	83.75
Zm00001d003118_P001	Maize	cytosol	81.76	82.8
GSMUA_Achr4P20370_001	Banana	cytosol	59.75	82.61
TraesCS6A01G231200.1	Wheat	cytosol	83.65	82.61
KRH37858	Soybean	endoplasmic reticulum, extracellular	87.42	78.53
CDY44261	Canola	cytosol	82.39	74.01
CDX96205	Canola	cytosol	67.92	73.97
HORVU6Hr1G056610.3	Barley	mitochondrion	82.39	71.2
GSMUA_Achr9P09150_001	Banana	cytosol	59.75	68.35
CDX88047	Canola	vacuole	84.91	65.53
CDY64632	Canola	extracellular	84.91	58.7
GSMUA_Achr3P13330_001	Banana	plastid	60.38	45.71
CDX91453	Canola	cytosol	68.55	44.86
Bra018026.1-P	Field mustard	cytosol	77.99	44.29
CDX80385	Canola	cytosol	84.91	34.79

Protein Annotations

MapMan:17.1.3.1.12	Gene3D:2.40.50.1000	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627
GO:GO:0030529	UniProt:K4DF02	InterPro:NA-bd_OB-fold	PFAM:PD001295	PFAM:PF00366	PFAM:PF16205
PRINTS:PR00973	ScanProsite:PS00056	PANTHER:PTHR10744	PANTHER:PTHR10744:SF17	InterPro:Ribosomal_S11_N	InterPro:Ribosomal_S17/S11
InterPro:Ribosomal_S17_CS	InterPro:Ribosomal_S17_arc-typ	SUPFAM:SSF50249	EnsemblPlantsGene:Solyc12g042080.1	EnsemblPlants:Solyc12g042080.1.1	TIGRFAMs:TIGR03630
UniParc:UPI000276A992	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:40756094..40758491

Molecular Weight (calculated)

17661.7 Da

IEP (calculated)

11.160

GRAVY (calculated)

-0.611

Length

159 amino acids

Sequence
(BLAST)

001: MAEQTEKAFL KQPGVFLSSK KTGKGKRPGK GGNRYFKSIG LGFKTPREAT EGTYIDKKCP FTGNVSIRGR ILAGTCHSAK MNRTIIVRRN YLHYVKKYQR
101: YEKRHSNIPA HISPCFRVKE GDHVTIGQCR PLSKTVRFNV LKVIPAGSGG GGKKAFTGM

Best Arabidopsis Sequence Match ( AT5G23740.1 )
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV

Arabidopsis Description

RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.