Factsheet for Os04t0502300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12457	Sorghum	cytosol	95.62	95.62
Zm00001d003118_P001	Maize	cytosol	93.75	95.54
CDX87000	Canola	cytosol	29.38	92.16
TraesCS6D01G203900.1	Wheat	cytosol	91.88	91.3
Os04t0613500-00	Rice	cytosol	45.62	91.25
TraesCS6A01G231200.1	Wheat	cytosol	90.62	90.06
Os07t0565100-00	Rice	nucleus	90.0	89.44
Os07t0565000-01	Rice	cytosol	90.0	89.44
Os04t0613600-00	Rice	cytosol	90.0	89.44
AT4G30800.1	Thale cress	cytosol	86.88	87.42
KRH20240	Soybean	nucleus	86.88	87.42
KRH03569	Soybean	cytosol, nucleus	86.88	87.42
GSMUA_Achr6P35270_001	Banana	cytosol	86.88	87.42
AT5G23740.1	Thale cress	cytosol	86.88	87.42
AT3G48930.1	Thale cress	cytosol	86.88	86.88
VIT_11s0118g00680.t01	Wine grape	cytosol	86.88	86.88
CDY05882	Canola	cytosol	86.25	86.79
CDY64707	Canola	cytosol	86.25	86.79
Bra029928.1-P	Field mustard	cytosol	86.25	86.79
CDX83060	Canola	cytosol	86.25	86.79
VIT_04s0008g06220.t01	Wine grape	cytosol	86.25	86.25
CDY46968	Canola	cytosol	85.62	86.16
Bra009706.1-P	Field mustard	cytosol	85.62	86.16
CDY69343	Canola	cytosol	85.62	86.16
CDX87158	Canola	cytosol	85.62	86.16
Bra026484.1-P	Field mustard	cytosol	85.62	86.16
Bra029381.1-P	Field mustard	cytosol	85.62	86.16
KRH37857	Soybean	cytosol	85.0	85.53
Solyc12g042080.1.1	Tomato	nucleus	85.0	85.53
Os08t0207000-01	Rice	cytosol	29.38	85.45
PGSC0003DMT400015118	Potato	cytosol	83.12	85.26
CDY16867	Canola	cytosol	84.38	84.91
Solyc06g073800.2.1	Tomato	cytosol, nucleus	84.38	84.91
Solyc06g073790.2.1	Tomato	cytosol	84.38	84.91
GSMUA_Achr7P20890_001	Banana	cytosol	65.0	83.2
GSMUA_Achr6P22460_001	Banana	cytosol	83.12	83.12
KRH75732	Soybean	cytosol, plastid	61.25	83.05
PGSC0003DMT400013305	Potato	cytosol	82.5	83.02
PGSC0003DMT400015122	Potato	mitochondrion	51.25	81.19
GSMUA_Achr4P20370_001	Banana	cytosol	56.88	79.13
CDX96205	Canola	cytosol	70.62	77.4
HORVU6Hr1G056610.3	Barley	mitochondrion	88.75	77.17
CDY44261	Canola	cytosol	83.75	75.71
KRH37858	Soybean	endoplasmic reticulum, extracellular	83.12	75.14
PGSC0003DMT400015117	Potato	cytosol	80.0	71.51
CDX88047	Canola	vacuole	85.62	66.5
GSMUA_Achr9P09150_001	Banana	cytosol	56.88	65.47
CDY64632	Canola	extracellular	86.25	60.0
CDX86999	Canola	mitochondrion	28.12	50.56
Bra018026.1-P	Field mustard	cytosol	78.75	45.0
CDX91453	Canola	cytosol	68.12	44.86
GSMUA_Achr3P13330_001	Banana	plastid	57.5	43.81
CDX80385	Canola	cytosol	85.62	35.31

Protein Annotations

MapMan:17.1.3.1.12	Gene3D:2.40.50.1000	EntrezGene:4336317	ProteinID:BAF15149.1	ProteinID:BAS89946.1	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	InterPro:NA-bd_OB-fold	EnsemblPlantsGene:Os04g0502300	EnsemblPlants:Os04t0502300-01
PFAM:PD001295	PFAM:PF00366	PFAM:PF16205	PRINTS:PR00973	ScanProsite:PS00056	PANTHER:PTHR10744
PANTHER:PTHR10744:SF18	UniProt:Q0JBY8	InterPro:Ribosomal_S11_N	InterPro:Ribosomal_S17/S11	InterPro:Ribosomal_S17_CS	InterPro:Ribosomal_S17_arc-typ
SUPFAM:SSF50249	TIGRFAMs:TIGR03630	UniParc:UPI0000DD916A	RefSeq:XP_015633944.1	SEG:seg	:

Description

Similar to 40S ribosomal protein S11. (Os04t0502300-01)

Coordinates

chr4:-:25076814..25079035

Molecular Weight (calculated)

18002.3 Da

IEP (calculated)

11.279

GRAVY (calculated)

-0.502

Length

160 amino acids

Sequence
(BLAST)

001: MAEQTERAFL KQPKVFLCPK KTTKGKKPGK GGNRFWKNIG LGFKTPREAI EGTYIDKKCP FTGTVSIRGR IIAGTCHSAK MNRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HISPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGSKS GAGKKVFTAA

Best Arabidopsis Sequence Match ( AT3G48930.1 )
(BLAST)

001: MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYVDKKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRD YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHIIIGQCR PLSKTVRFNV LKVIPAGSSS SFGKKAFTGM

Arabidopsis Description

RPS11A40S ribosomal protein S11-1 [Source:UniProtKB/Swiss-Prot;Acc:P16181]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.