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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • plastid 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 19621931
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os04t0613500-00 Rice cytosol 49.69 100.0
Os04t0613600-00 Rice cytosol 100.0 100.0
Os07t0565000-01 Rice cytosol 100.0 100.0
Os08t0207000-01 Rice cytosol 31.68 92.73
TraesCS2B01G443000.1 Wheat cytosol, golgi, nucleus, unclear 90.06 91.19
TraesCS2D01G421300.1 Wheat cytosol 90.06 91.19
Os04t0502300-01 Rice cytosol, plasma membrane, plastid 89.44 90.0
GSMUA_Achr3P13340_001 Banana cytosol 33.54 80.6
GSMUA_Achr4P20380_001 Banana cytosol 33.54 80.6
HORVU2Hr1G099230.8 Barley cytosol, mitochondrion 90.68 70.87
Protein Annotations
MapMan:17.1.3.1.12Gene3D:2.40.50.1000EntrezGene:4336975EntrezGene:4336976EntrezGene:4343620EntrezGene:9271697
EMBL:AK121056ProteinID:BAC79661.1ProteinID:BAD30107.1ProteinID:BAF15770.2ProteinID:BAF21921.1ProteinID:BAS90977.1
ProteinID:BAT02171.1ProteinID:BAT02172.1ProteinID:EEE67424.1GO:GO:0003674GO:GO:0003735GO:GO:0005198
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840
GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0019538
GO:GO:0022627InterPro:NA-bd_OB-foldEnsemblPlantsGene:Os07g0565100EnsemblPlants:Os07t0565100-00PFAM:PD001295PFAM:PF00366
PFAM:PF16205PRINTS:PR00973ScanProsite:PS00056PANTHER:PTHR10744PANTHER:PTHR10744:SF18UniProt:Q7XIK5
InterPro:Ribosomal_S11_NInterPro:Ribosomal_S17/S11InterPro:Ribosomal_S17_CSInterPro:Ribosomal_S17_arc-typSUPFAM:SSF50249TIGRFAMs:TIGR03630
UniParc:UPI00001B39B0RefSeq:XP_015636632.1RefSeq:XP_015636633.1RefSeq:XP_015646982.1RefSeq:XP_015646984.1SEG:seg
Description
Similar to 40S ribosomal protein S11. (Os07t0565100-00)
Coordinates
chr7:-:22657270..22659266
Molecular Weight (calculated)
17836.9 Da
IEP (calculated)
11.284
GRAVY (calculated)
-0.506
Length
161 amino acids
Sequence
(BLAST)
001: MAEQTEKAFL KQPKVFLSSK KSGKGKKPGK GGNRFWKSIG LGFKTPREAI EGTYIDKKCP FTGTVSIRGR IIAGTCHSAK MNRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGSTG GSGGKKAFTA A
Best Arabidopsis Sequence Match ( AT5G23740.1 )
(BLAST)
001: MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
101: YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA FGKKAFTGV
Arabidopsis Description
RPS11CRPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.